Literature DB >> 10739138

Submicrosecond real-time fluorescence sampling: application to protein folding.

J Ervin1, J Sabelko, M Gruebele.   

Abstract

Time-resolved fluorescence detection has become a central tool in the study of protein folding. This article briefly reviews modern fluorescence techniques and then focuses on recent improvements made possible by array photomultipliers, computer-controlled data gating, and long-memory multi-channel digitizers. It is now possible to detect fluorescence wavelength profiles and/or fluorescence decay transients very cost effectively with sub-microsecond kinetic time resolution out to long times. Folding kinetics can be analyzed by singular value decomposition (SVD) or chi-analysis. The latter provides an objective method for detecting nonexponential kinetics in two-state systems.

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Year:  2000        PMID: 10739138     DOI: 10.1016/s1011-1344(00)00002-6

Source DB:  PubMed          Journal:  J Photochem Photobiol B        ISSN: 1011-1344            Impact factor:   6.252


  15 in total

1.  A natural missing link between activated and downhill protein folding scenarios.

Authors:  Feng Liu; Caroline Maynard; Gregory Scott; Artem Melnykov; Kathleen B Hall; Martin Gruebele
Journal:  Phys Chem Chem Phys       Date:  2010-02-11       Impact factor: 3.676

2.  Kinetics are probe-dependent during downhill folding of an engineered lambda6-85 protein.

Authors:  Hairong Ma; Martin Gruebele
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-07       Impact factor: 11.205

3.  Mechanisms of tryptophan fluorescence shifts in proteins.

Authors:  J T Vivian; P R Callis
Journal:  Biophys J       Date:  2001-05       Impact factor: 4.033

4.  Axis-dependent anisotropy in protein unfolding from integrated nonequilibrium single-molecule experiments, analysis, and simulation.

Authors:  Rene A Nome; Jason Ming Zhao; Wouter D Hoff; Norbert F Scherer
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-19       Impact factor: 11.205

5.  Enthalpic and entropic stages in alpha-helical peptide unfolding, from laser T-jump/UV Raman spectroscopy.

Authors:  Gurusamy Balakrishnan; Ying Hu; Gretchen M Bender; Zelleka Getahun; William F DeGrado; Thomas G Spiro
Journal:  J Am Chem Soc       Date:  2007-10-02       Impact factor: 15.419

6.  A one-dimensional free energy surface does not account for two-probe folding kinetics of protein alpha(3)D.

Authors:  Feng Liu; Charles Dumont; Yongjin Zhu; William F DeGrado; Feng Gai; Martin Gruebele
Journal:  J Chem Phys       Date:  2009-02-14       Impact factor: 3.488

7.  Evaluating beta-turn mimics as beta-sheet folding nucleators.

Authors:  Amelia A Fuller; Deguo Du; Feng Liu; Jennifer E Davoren; Gira Bhabha; Gerard Kroon; David A Case; H Jane Dyson; Evan T Powers; Peter Wipf; Martin Gruebele; Jeffery W Kelly
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-18       Impact factor: 11.205

8.  UV resonance Raman studies of the NaClO4 dependence of poly-L-lysine conformation and hydrogen exchange kinetics.

Authors:  Lu Ma; Zhenmin Hong; Bhavya Sharma; Sanford Asher
Journal:  J Phys Chem B       Date:  2012-01-10       Impact factor: 2.991

9.  Proline can have opposite effects on fast and slow protein folding phases.

Authors:  Szabolcs Osváth; Martin Gruebele
Journal:  Biophys J       Date:  2003-08       Impact factor: 4.033

10.  High-Resolution Mapping of the Folding Transition State of a WW Domain.

Authors:  Kapil Dave; Marcus Jäger; Houbi Nguyen; Jeffery W Kelly; Martin Gruebele
Journal:  J Mol Biol       Date:  2016-02-12       Impact factor: 5.469

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