Literature DB >> 10731150

A BAC-based physical map of the major autosomes of Drosophila melanogaster.

R A Hoskins1, C R Nelson, B P Berman, T R Laverty, R A George, L Ciesiolka, M Naeemuddin, A D Arenson, J Durbin, R G David, P E Tabor, M R Bailey, D R DeShazo, J Catanese, A Mammoser, K Osoegawa, P J de Jong, S E Celniker, R A Gibbs, G M Rubin, S E Scherer.   

Abstract

We constructed a bacterial artificial chromosome (BAC)-based physical map of chromosomes 2 and 3 of Drosophila melanogaster, which constitute 81% of the genome. Sequence tagged site (STS) content, restriction fingerprinting, and polytene chromosome in situ hybridization approaches were integrated to produce a map spanning the euchromatin. Three of five remaining gaps are in repeat-rich regions near the centromeres. A tiling path of clones spanning this map and STS maps of chromosomes X and 4 was sequenced to low coverage; the maps and tiling path sequence were used to support and verify the whole-genome sequence assembly, and tiling path BACs were used as templates in sequence finishing.

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Year:  2000        PMID: 10731150     DOI: 10.1126/science.287.5461.2271

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  58 in total

1.  A physical map of the polytenized region (101EF-102F) of chromosome 4 in Drosophila melanogaster.

Authors:  J Locke; L Podemski; N Aippersbach; H Kemp; R Hodgetts
Journal:  Genetics       Date:  2000-07       Impact factor: 4.562

2.  Bacterial artificial chromosome-based physical map of the rice genome constructed by restriction fingerprint analysis.

Authors:  Q Tao; Y L Chang; J Wang; H Chen; M N Islam-Faridi; C Scheuring; B Wang; D M Stelly; H B Zhang
Journal:  Genetics       Date:  2001-08       Impact factor: 4.562

3.  Highly efficient modification of bacterial artificial chromosomes (BACs) using novel shuttle vectors containing the R6Kgamma origin of replication.

Authors:  Shiaoching Gong; Xiangdong William Yang; Chenjian Li; Nathaniel Heintz
Journal:  Genome Res       Date:  2002-12       Impact factor: 9.043

4.  Software for automated analysis of DNA fingerprinting gels.

Authors:  Daniel R Fuhrmann; Martin I Krzywinski; Readman Chiu; Parvaneh Saeedi; Jacqueline E Schein; Ian E Bosdet; Asif Chinwalla; LaDeana W Hillier; Robert H Waterston; John D McPherson; Steven J M Jones; Marco A Marra
Journal:  Genome Res       Date:  2003-05       Impact factor: 9.043

5.  A BAC- and BIBAC-based physical map of the soybean genome.

Authors:  Chengcang Wu; Shuku Sun; Padmavathi Nimmakayala; Felipe A Santos; Khalid Meksem; Rachael Springman; Kejiao Ding; David A Lightfoot; Hong-Bin Zhang
Journal:  Genome Res       Date:  2004-01-12       Impact factor: 9.043

6.  Locating sequence on FPC maps and selecting a minimal tiling path.

Authors:  Friedrich W Engler; James Hatfield; William Nelson; Carol A Soderlund
Journal:  Genome Res       Date:  2003-08-12       Impact factor: 9.043

7.  Meiotic recombination in Drosophila females depends on chromosome continuity between genetically defined boundaries.

Authors:  Dalia Sherizen; Janet K Jang; Rajal Bhagat; Naohiro Kato; Kim S McKim
Journal:  Genetics       Date:  2004-11-15       Impact factor: 4.562

8.  BAC clones generated from sheared DNA.

Authors:  Kazutoyo Osoegawa; Gery M Vessere; Chung Li Shu; Roger A Hoskins; José P Abad; Beatriz de Pablos; Alfredo Villasante; Pieter J de Jong
Journal:  Genomics       Date:  2006-11-13       Impact factor: 5.736

9.  A molecularly defined duplication set for the X chromosome of Drosophila melanogaster.

Authors:  Koen J T Venken; Ellen Popodi; Stacy L Holtzman; Karen L Schulze; Soo Park; Joseph W Carlson; Roger A Hoskins; Hugo J Bellen; Thomas C Kaufman
Journal:  Genetics       Date:  2010-09-27       Impact factor: 4.562

10.  SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing.

Authors:  Juliane C Dohm; Claudio Lottaz; Tatiana Borodina; Heinz Himmelbauer
Journal:  Genome Res       Date:  2007-10-01       Impact factor: 9.043

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