Literature DB >> 10725365

Accuracy of thymine-thymine dimer bypass by Saccharomyces cerevisiae DNA polymerase eta.

M T Washington1, R E Johnson, S Prakash, L Prakash.   

Abstract

The Saccharomyces cerevisiae RAD30 gene functions in error-free replication of UV-damaged DNA. RAD30 encodes a DNA polymerase, Pol eta, which inserts two adenines opposite the two thymines of a cis-syn thymine-thymine (T-T) dimer. Here we use steady-state kinetics to determine the accuracy of DNA synthesis opposite the T-T dimer. Surprisingly, the accuracy of DNA synthesis opposite the damaged DNA is nearly indistinguishable from that opposite nondamaged DNA, with frequencies of misincorporation of about 10(-2) to 10(-3). These studies support the hypothesis that unlike most DNA polymerases, Pol eta is able to tolerate distortions in DNA resulting from damage, which then enables the polymerase to utilize the intrinsic base pairing ability of the T-T dimer.

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Year:  2000        PMID: 10725365      PMCID: PMC16198          DOI: 10.1073/pnas.97.7.3094

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

Review 1.  The 'A rule' of mutagen specificity: a consequence of DNA polymerase bypass of non-instructional lesions?

Authors:  B S Strauss
Journal:  Bioessays       Date:  1991-02       Impact factor: 4.345

2.  Xeroderma pigmentosum variant cells are less likely than normal cells to incorporate dAMP opposite photoproducts during replication of UV-irradiated plasmids.

Authors:  Y C Wang; V M Maher; J J McCormick
Journal:  Proc Natl Acad Sci U S A       Date:  1991-09-01       Impact factor: 11.205

Review 3.  Fidelity mechanisms in DNA replication.

Authors:  H Echols; M F Goodman
Journal:  Annu Rev Biochem       Date:  1991       Impact factor: 23.643

4.  The frequency and accuracy of replication past a thymine-thymine cyclobutane dimer are very different in Saccharomyces cerevisiae and Escherichia coli.

Authors:  P E Gibbs; B J Kilbey; S K Banerjee; C W Lawrence
Journal:  J Bacteriol       Date:  1993-05       Impact factor: 3.490

Review 5.  On the processivity of polymerases.

Authors:  P H Von Hippel; F R Fairfield; M K Dolejsi
Journal:  Ann N Y Acad Sci       Date:  1994-07-29       Impact factor: 5.691

6.  Determination of pyrimidine dimer unwinding angle by measurement of DNA electrophoretic mobility.

Authors:  G Ciarrocchi; A M Pedrini
Journal:  J Mol Biol       Date:  1982-02-25       Impact factor: 5.469

7.  1H NMR study of the exchangeable protons of the duplex d(GCGTTGCG).d(CGCAACGC) containing a thymine photodimer.

Authors:  J Kemmink; R Boelens; T Koning; G A van der Marel; J H van Boom; R Kaptein
Journal:  Nucleic Acids Res       Date:  1987-06-11       Impact factor: 16.971

8.  Site-specific effect of thymine dimer formation on dAn.dTn tract bending and its biological implications.

Authors:  C I Wang; J S Taylor
Journal:  Proc Natl Acad Sci U S A       Date:  1991-10-15       Impact factor: 11.205

9.  Ultraviolet hypermutability of a shuttle vector propagated in xeroderma pigmentosum variant cells.

Authors:  H L Waters; S Seetharam; M M Seidman; K H Kraemer
Journal:  J Invest Dermatol       Date:  1993-11       Impact factor: 8.551

10.  Contrasting structural impacts induced by cis-syn cyclobutane dimer and (6-4) adduct in DNA duplex decamers: implication in mutagenesis and repair activity.

Authors:  J K Kim; D Patel; B S Choi
Journal:  Photochem Photobiol       Date:  1995-07       Impact factor: 3.421

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  100 in total

1.  The many faces of DNA polymerases: strategies for mutagenesis and for mutational avoidance.

Authors:  E C Friedberg; W J Feaver; V L Gerlach
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-23       Impact factor: 11.205

2.  Roles of yeast DNA polymerases delta and zeta and of Rev1 in the bypass of abasic sites.

Authors:  L Haracska; I Unk; R E Johnson; E Johansson; P M Burgers; S Prakash; L Prakash
Journal:  Genes Dev       Date:  2001-04-15       Impact factor: 11.361

3.  Role of DNA polymerase eta in the bypass of a (6-4) TT photoproduct.

Authors:  R E Johnson; L Haracska; S Prakash; L Prakash
Journal:  Mol Cell Biol       Date:  2001-05       Impact factor: 4.272

4.  Replication past O(6)-methylguanine by yeast and human DNA polymerase eta.

Authors:  L Haracska; S Prakash; L Prakash
Journal:  Mol Cell Biol       Date:  2000-11       Impact factor: 4.272

5.  Mechanism of nucleotide incorporation opposite a thymine-thymine dimer by yeast DNA polymerase eta.

Authors:  M Todd Washington; Louise Prakash; Satya Prakash
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-03       Impact factor: 11.205

6.  A mechanism for the exclusion of low-fidelity human Y-family DNA polymerases from base excision repair.

Authors:  Lajos Haracska; Louise Prakash; Satya Prakash
Journal:  Genes Dev       Date:  2003-11-15       Impact factor: 11.361

7.  Requirement of Watson-Crick hydrogen bonding for DNA synthesis by yeast DNA polymerase eta.

Authors:  M Todd Washington; Sandra A Helquist; Eric T Kool; Louise Prakash; Satya Prakash
Journal:  Mol Cell Biol       Date:  2003-07       Impact factor: 4.272

8.  Yeast DNA polymerase eta makes functional contacts with the DNA minor groove only at the incoming nucleoside triphosphate.

Authors:  M Todd Washington; William T Wolfle; Thomas E Spratt; Louise Prakash; Satya Prakash
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-11       Impact factor: 11.205

9.  Efficient and error-free replication past a minor-groove DNA adduct by the sequential action of human DNA polymerases iota and kappa.

Authors:  M Todd Washington; Irina G Minko; Robert E Johnson; William T Wolfle; Thomas M Harris; R Stephen Lloyd; Satya Prakash; Louise Prakash
Journal:  Mol Cell Biol       Date:  2004-07       Impact factor: 4.272

10.  Enzymatic switching for efficient and accurate translesion DNA replication.

Authors:  Scott D McCulloch; Robert J Kokoska; Olga Chilkova; Carrie M Welch; Erik Johansson; Peter M J Burgers; Thomas A Kunkel
Journal:  Nucleic Acids Res       Date:  2004-08-27       Impact factor: 16.971

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