Literature DB >> 10719494

Rapid automated tracing and feature extraction from retinal fundus images using direct exploratory algorithms.

A Can1, H Shen, J N Turner, H L Tanenbaum, B Roysam.   

Abstract

Algorithms are presented for rapid, automatic, robust, adaptive, and accurate tracing of retinal vasculature and analysis of intersections and crossovers. This method improves upon prior work in several ways: 1) automatic adaptation from frame to frame without manual initialization/adjustment, with few tunable parameters; 2) robust operation on image sequences exhibiting natural variability, poor and varying imaging conditions, including over/under-exposure, low contrast, and artifacts such as glare; 3) does not require the vasculature to be connected, so it can handle partial views; and 4) operation is efficient enough for use on unspecialized hardware, and amenable to deadline-driven computing, being able to produce a rapidly and monotonically improving sequence of usable partial results. Increased computation can be traded for superior tracing performance. Its efficiency comes from direct processing on gray-level data without any preprocessing, and from processing only a minimally necessary fraction of pixels in an exploratory manner, avoiding low-level image-wide operations such as thresholding, edge detection, and morphological processing. These properties make the algorithm suited to real-time, on-line (live) processing and is being applied to computer-assisted laser retinal surgery.

Mesh:

Year:  1999        PMID: 10719494     DOI: 10.1109/4233.767088

Source DB:  PubMed          Journal:  IEEE Trans Inf Technol Biomed        ISSN: 1089-7771


  39 in total

1.  Unsupervised fuzzy based vessel segmentation in pathological digital fundus images.

Authors:  Giri Babu Kande; P Venkata Subbaiah; T Satya Savithri
Journal:  J Med Syst       Date:  2009-05-09       Impact factor: 4.460

2.  Neurite outgrowth at the biomimetic interface.

Authors:  Celinda M Kofron; Yu-Ting Liu; Cristina Y López-Fagundo; Jennifer A Mitchel; Diane Hoffman-Kim
Journal:  Ann Biomed Eng       Date:  2010-05-04       Impact factor: 3.934

3.  A computational framework for studying neuron morphology from in vitro high content neuron-based screening.

Authors:  Yue Huang; Xiaobo Zhou; Benchun Miao; Marta Lipinski; Yong Zhang; Fuhai Li; Alexei Degterev; Junying Yuan; Guangshu Hu; Stephen T C Wong
Journal:  J Neurosci Methods       Date:  2010-05-24       Impact factor: 2.390

4.  Automatic neuron segmentation and neural network analysis method for phase contrast microscopy images.

Authors:  Jincheng Pang; Nurdan Özkucur; Michael Ren; David L Kaplan; Michael Levin; Eric L Miller
Journal:  Biomed Opt Express       Date:  2015-10-16       Impact factor: 3.732

5.  NeuronMetrics: software for semi-automated processing of cultured neuron images.

Authors:  Martha L Narro; Fan Yang; Robert Kraft; Carola Wenk; Alon Efrat; Linda L Restifo
Journal:  Brain Res       Date:  2007-01-31       Impact factor: 3.252

6.  EyeSLAM: Real-time simultaneous localization and mapping of retinal vessels during intraocular microsurgery.

Authors:  Daniel Braun; Sungwook Yang; Joseph N Martel; Cameron N Riviere; Brian C Becker
Journal:  Int J Med Robot       Date:  2017-07-18       Impact factor: 2.547

7.  2-D registration and 3-D shape inference of the retinal fundus from fluorescein images.

Authors:  Tae Eun Choe; Gerard Medioni; Isaac Cohen; Alexander C Walsh; Srinivas R Sadda
Journal:  Med Image Anal       Date:  2007-10-25       Impact factor: 8.545

8.  Neurient: an algorithm for automatic tracing of confluent neuronal images to determine alignment.

Authors:  Jennifer A Mitchel; Ian S Martin; Diane Hoffman-Kim
Journal:  J Neurosci Methods       Date:  2013-02-04       Impact factor: 2.390

9.  MDL constrained 3-D grayscale skeletonization algorithm for automated extraction of dendrites and spines from fluorescence confocal images.

Authors:  Xiaosong Yuan; Joshua T Trachtenberg; Steve M Potter; Badrinath Roysam
Journal:  Neuroinformatics       Date:  2009-12-11

10.  Robust 3D reconstruction and identification of dendritic spines from optical microscopy imaging.

Authors:  Firdaus Janoos; Kishore Mosaliganti; Xiaoyin Xu; Raghu Machiraju; Kun Huang; Stephen T C Wong
Journal:  Med Image Anal       Date:  2008-07-24       Impact factor: 8.545

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