Literature DB >> 10716178

Structure of tick anticoagulant peptide at 1.6 A resolution complexed with bovine pancreatic trypsin inhibitor.

R St Charles1, K Padmanabhan, R V Arni, K P Padmanabhan, A Tulinsky.   

Abstract

The structure of tick anticoagulant peptide (TAP) has been determined by X-ray crystallography at 1.6 A resolution complexed with bovine pancreatic trypsin inhibitor (BPTI). The TAP-BPTI crystals are tetragonal, a = b = 46.87, c = 50.35 A, space group P41, four complexes per unit cell. The TAP molecules are highly dipolar and form an intermolecular helical array along the c-axis with a diameter of about 45 A. Individual TAP units interact in a head-to-tail fashion, the positive end of one molecule associating with the distal negative end of another, and vice versa. The BPTI molecules have a uniformly distributed positively charged surface that interacts extensively through 14 hydrogen bonds and two hydrogen bonded salt bridges with the helical groove around the helical TAP chains. Comparing the structure of TAP in TAP-BPTI with TAP bound to factor Xa(Xa) suggests a massive reorganization in the N-terminal tetrapeptide and the first disulfide loop of TAP (Cys5T-Cys15T) upon binding to Xa. The Tyr1(T)OH atom of TAP moves 14.2 A to interact with Asp189 of the S1 specificity site, Arg3(T)CZ moves 5.0 A with the guanidinium group forming a cation-pi-electron complex in the S4 subsite of Xa, while Lys7(T)NZ differs in position by 10.6 A in TAP-BPTI and TAP-Xa, all of which indicates a different pre-Xa-bound conformation for the N-terminal of TAP in its native state. In contrast to TAP, the BPTI structure of TAP-BPTI is practically the same as all those of previously determined structures of BPTI, only arginine and lysine side-chain conformations showing significant differences.

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Year:  2000        PMID: 10716178      PMCID: PMC2144540          DOI: 10.1110/ps.9.2.265

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  21 in total

1.  Site-directed analysis of the functional domains in the factor Xa inhibitor tick anticoagulant peptide: identification of two distinct regions that constitute the enzyme recognition sites.

Authors:  C T Dunwiddie; M P Neeper; E M Nutt; L Waxman; D E Smith; K J Hofmann; P K Lumma; V M Garsky; G P Vlasuk
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Review 2.  Natural protein proteinase inhibitors and their interaction with proteinases.

Authors:  W Bode; R Huber
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4.  NMR solution structure of the recombinant tick anticoagulant protein (rTAP), a factor Xa inhibitor from the tick Ornithodoros moubata.

Authors:  W Antuch; P Güntert; M Billeter; T Hawthorne; H Grossenbacher; K Wüthrich
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5.  Acetylcholine binding by a synthetic receptor: implications for biological recognition.

Authors:  D A Dougherty; D A Stauffer
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6.  Reaction pathway for inhibition of blood coagulation factor Xa by tick anticoagulant peptide.

Authors:  S P Jordan; S S Mao; S D Lewis; J A Shafer
Journal:  Biochemistry       Date:  1992-06-16       Impact factor: 3.162

Review 7.  Proposed cation-pi mediated binding by factor Xa: a novel enzymatic mechanism for molecular recognition.

Authors:  Z Lin; M E Johnson
Journal:  FEBS Lett       Date:  1995-08-14       Impact factor: 4.124

8.  Refined structure of the hirudin-thrombin complex.

Authors:  T J Rydel; A Tulinsky; W Bode; R Huber
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9.  Structure of a retro-binding peptide inhibitor complexed with human alpha-thrombin.

Authors:  L Tabernero; C Y Chang; S L Ohringer; W F Lau; E J Iwanowicz; W C Han; T C Wang; S M Seiler; D G Roberts; J S Sack
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10.  NMR structure determination of tick anticoagulant peptide (TAP).

Authors:  M S Lim-Wilby; K Hallenga; M de Maeyer; I Lasters; G P Vlasuk; T K Brunck
Journal:  Protein Sci       Date:  1995-02       Impact factor: 6.725

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4.  Identification and In Silico Prediction of Anticoagulant Peptides from the Enzymatic Hydrolysates of Mytilus edulis Proteins.

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5.  Compactness of Protein Folds Alters Disulfide-Bond Reducibility by Three Orders of Magnitude: A Comprehensive Kinetic Case Study on the Reduction of Differently Sized Tryptophan Cage Model Proteins.

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  5 in total

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