Literature DB >> 10713530

How do the x-ray structure and the NMR structure of FMN-binding protein differ?

K Suto1, K Kawagoe, N Shibata, Y Morimoto, Y Higuchi, M Kitamura, T Nakaya, N Yasuoka.   

Abstract

The crystal structure of FMN-binding protein (FMN-bp) from Desulfovibrio vulgaris Miyazaki F was solved by the multiple isomorphous replacement method and refined to an R factor of 15.1% at 1.3 A resolution. FMN-bp exists in a dimeric form in the crystal, in contrast to the monomeric structure determined by NMR. R.m.s. deviations between the crystal structure and the solution structure are more than 2 A, which implies significant differences. There are some hydrophobic residues in the interface between the two monomers. In particular, Leu122 in the C-terminus has a close contact with the o-xylene moiety of FMN, while solvent molecules may cover the o-xylene moiety in the solution structure.

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Year:  2000        PMID: 10713530     DOI: 10.1107/s0907444900000111

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  4 in total

1.  Crystallization and preliminary X-ray crystallographic study of flavoredoxin from Desulfovibrio vulgaris Miyazaki F.

Authors:  Yasufumi Ueda; Naoki Shibata; Daisuke Takeuchi; Masaya Kitamura; Yoshiki Higuchi
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-08-20

2.  Structure of Ddn, the deazaflavin-dependent nitroreductase from Mycobacterium tuberculosis involved in bioreductive activation of PA-824.

Authors:  Susan E Cellitti; Jennifer Shaffer; David H Jones; Tathagata Mukherjee; Meera Gurumurthy; Badry Bursulaya; Helena I Boshoff; Inhee Choi; Amit Nayyar; Yong Sok Lee; Joseph Cherian; Pornwaratt Niyomrattanakit; Thomas Dick; Ujjini H Manjunatha; Clifton E Barry; Glen Spraggon; Bernhard H Geierstanger
Journal:  Structure       Date:  2012-01-11       Impact factor: 5.006

3.  Experimental Evidence for a Revision in the Annotation of Putative Pyridoxamine 5'-Phosphate Oxidases P(N/M)P from Fungi.

Authors:  Tatiana Domitrovic; Diana P Raymundo; Tiago Fernandes da Silva; Fernando L Palhano
Journal:  PLoS One       Date:  2015-09-01       Impact factor: 3.240

4.  Cryo-EM structure of a thermostable bacterial nanocompartment.

Authors:  Timothy Wiryaman; Navtej Toor
Journal:  IUCrJ       Date:  2021-04-02       Impact factor: 4.769

  4 in total

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