Literature DB >> 10712951

International Rice Genome Sequencing Project: the effort to completely sequence the rice genome.

T Sasaki1, B Burr.   

Abstract

The International Rice Genome Sequencing Project (IRGSP) involves researchers from ten countries who are working to completely and accurately sequence the rice genome within a short period. Sequencing uses a map-based clone-by-clone shotgun strategy; shared bacterial artificial chromosome/P1-derived artificial chromosome libraries have been constructed from Oryza sativa ssp. japonica variety 'Nipponbare'. End-sequencing, fingerprinting and marker-aided PCR screening are being used to make sequence-ready contigs. Annotated sequences are immediately released for public use and are made available with supplemental information at each IRGSP member's website. The IRGSP works to promote the development of rice and cereal genomics in addition to producing genome sequence data.

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Year:  2000        PMID: 10712951     DOI: 10.1016/s1369-5266(99)00047-3

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  109 in total

1.  High-resolution pachytene chromosome mapping of bacterial artificial chromosomes anchored by genetic markers reveals the centromere location and the distribution of genetic recombination along chromosome 10 of rice.

Authors:  Z Cheng; G G Presting; C R Buell; R A Wing; J Jiang
Journal:  Genetics       Date:  2001-04       Impact factor: 4.562

2.  Comparative sequence analysis reveals extensive microcolinearity in the lateral suppressor regions of the tomato, Arabidopsis, and Capsella genomes.

Authors:  M Rossberg; K Theres; A Acarkan; R Herrero; T Schmitt; K Schumacher; G Schmitz; R Schmidt
Journal:  Plant Cell       Date:  2001-04       Impact factor: 11.277

3.  Sequencing the rice genome.

Authors:  N A Eckardt
Journal:  Plant Cell       Date:  2000-11       Impact factor: 11.277

4.  Mapping and sequencing the rice genome.

Authors:  Benjamin Burr
Journal:  Plant Cell       Date:  2002-03       Impact factor: 11.277

5.  A fine physical map of the rice chromosome 4.

Authors:  Qiang Zhao; Yu Zhang; Zhukuan Cheng; Mingsheng Chen; Shengyue Wang; Qi Feng; Yucheng Huang; Ying Li; Yesheng Tang; Bo Zhou; Zhehua Chen; Shuliang Yu; Jingjie Zhu; Xin Hu; Jie Mu; Kai Ying; Pei Hao; Lei Zhang; Yiqi Lu; Lei S Zhang; Yilei Liu; Zhen Yu; Danlin Fan; Qijun Weng; Ling Chen; Tingting Lu; Xiaohui Liu; Peixin Jia; Tongguo Sun; Yongrui Wu; Yujun Zhang; Ying Lu; Can Li; Rong Wang; Haiyan Lei; Tao Li; Hao Hu; Mei Wu; Runquan Zhang; Jianping Guan; Jia Zhu; Gang Fu; Minghong Gu; Guofan Hong; Yongbiao Xue; Rod Wing; Jiming Jiang; Bin Han
Journal:  Genome Res       Date:  2002-05       Impact factor: 9.043

Review 6.  Abscisic acid signaling in seeds and seedlings.

Authors:  Ruth R Finkelstein; Srinivas S L Gampala; Christopher D Rock
Journal:  Plant Cell       Date:  2002       Impact factor: 11.277

7.  The automatic detection of homologous regions (ADHoRe) and its application to microcolinearity between Arabidopsis and rice.

Authors:  Klaas Vandepoele; Yvan Saeys; Cedric Simillion; Jeroen Raes; Yves Van De Peer
Journal:  Genome Res       Date:  2002-11       Impact factor: 9.043

8.  Proteome analysis of rice tissues by two-dimensional electrophoresis: an approach to the investigation of gibberellin regulated proteins.

Authors:  N Tanaka; H Konishi; M M K Khan; S Komatsu
Journal:  Mol Genet Genomics       Date:  2003-11-21       Impact factor: 3.291

9.  The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants.

Authors:  Shu Ouyang; C Robin Buell
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

10.  Somaclonal variation at the nucleotide sequence level in rice (Oryza sativa L.) as revealed by RAPD and ISSR markers, and by pairwise sequence analysis.

Authors:  Fredéric Ngezahayo; Yingshan Dong; Bao Liu
Journal:  J Appl Genet       Date:  2007       Impact factor: 3.240

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