Literature DB >> 10712947

Analysis of large-scale gene expression data.

G Sherlock1.   

Abstract

The advent of cDNA and oligonucleotide microarray technologies has led to a paradigm shift in biological investigation, such that the bottleneck in research is shifting from data generation to data analysis. Hierarchical clustering, divisive clustering, self-organizing maps and k-means clustering have all been recently used to make sense of this mass of data.

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Year:  2000        PMID: 10712947     DOI: 10.1016/s0952-7915(99)00074-6

Source DB:  PubMed          Journal:  Curr Opin Immunol        ISSN: 0952-7915            Impact factor:   7.486


  53 in total

1.  The Stanford Microarray Database.

Authors:  G Sherlock; T Hernandez-Boussard; A Kasarskis; G Binkley; J C Matese; S S Dwight; M Kaloper; S Weng; H Jin; C A Ball; M B Eisen; P T Spellman; P O Brown; D Botstein; J M Cherry
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

Review 2.  Gene expression profiling of lymphomas.

Authors:  U Hegde; W H Wilson
Journal:  Curr Oncol Rep       Date:  2001-05       Impact factor: 5.075

3.  Analysis of DNA microarrays using algorithms that employ rule-based expert knowledge.

Authors:  Kuang-Hung Pan; Chih-Jian Lih; Stanley N Cohen
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-19       Impact factor: 11.205

4.  Expression profiling of human tumors: the end of surgical pathology?

Authors:  M Ladanyi; W C Chan; T J Triche; W L Gerald
Journal:  J Mol Diagn       Date:  2001-08       Impact factor: 5.568

5.  Statistical modeling of large microarray data sets to identify stimulus-response profiles.

Authors:  L P Zhao; R Prentice; L Breeden
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-08       Impact factor: 11.205

6.  Subsystem identification through dimensionality reduction of large-scale gene expression data.

Authors:  Philip M Kim; Bruce Tidor
Journal:  Genome Res       Date:  2003-07       Impact factor: 9.043

7.  The computational analysis of scientific literature to define and recognize gene expression clusters.

Authors:  Soumya Raychaudhuri; Jeffrey T Chang; Farhad Imam; Russ B Altman
Journal:  Nucleic Acids Res       Date:  2003-08-01       Impact factor: 16.971

Review 8.  Interrogating mouse mammary cancer models: insights from gene expression profiling.

Authors:  Antonio A Fargiano; Kartiki V Desai; Jeffrey E Green
Journal:  J Mammary Gland Biol Neoplasia       Date:  2003-07       Impact factor: 2.673

9.  Transcriptional regulation: a genomic overview.

Authors:  José Luis Riechmann
Journal:  Arabidopsis Book       Date:  2002-04-04

10.  Transcriptional responses of uropathogenic Escherichia coli to increased environmental osmolality caused by salt or urea.

Authors:  Benjamin Withman; Thusitha S Gunasekera; Pavani Beesetty; Richard Agans; Oleg Paliy
Journal:  Infect Immun       Date:  2012-10-22       Impact factor: 3.441

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