Literature DB >> 10705439

Completing the E. coli proteome: a database of gene products characterised since the completion of the genome sequence.

G H Thomas1.   

Abstract

A database collating research on E. coli genes whose products have been characterised subsequent to in silico predictions from the completed genome sequence.

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Year:  1999        PMID： 10705439     DOI： 10.1093/bioinformatics/15.10.860

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  13 in total

Review 1.  Escherichia coli and Salmonella 2000: the view from here.

Authors:  M Schaechter
Journal:  Microbiol Mol Biol Rev       Date:  2001-03       Impact factor: 11.056

2.  Identification and characterization of a novel ABC iron transport system, fit, in Escherichia coli.

Authors:  Zhiming Ouyang; Richard Isaacson
Journal:  Infect Immun       Date:  2006-09-18       Impact factor: 3.441

3.  Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations.

Authors:  Eugene Kolker; Alex F Picone; Michael Y Galperin; Margaret F Romine; Roger Higdon; Kira S Makarova; Natali Kolker; Gordon A Anderson; Xiaoyun Qiu; Kenneth J Auberry; Gyorgy Babnigg; Alex S Beliaev; Paul Edlefsen; Dwayne A Elias; Yuri A Gorby; Ted Holzman; Joel A Klappenbach; Konstantinos T Konstantinidis; Miriam L Land; Mary S Lipton; Lee-Ann McCue; Matthew Monroe; Ljiljana Pasa-Tolic; Grigoriy Pinchuk; Samuel Purvine; Margrethe H Serres; Sasha Tsapin; Brian A Zakrajsek; Wenhong Zhu; Jizhong Zhou; Frank W Larimer; Charles E Lawrence; Monica Riley; Frank R Collart; John R Yates; Richard D Smith; Carol S Giometti; Kenneth H Nealson; James K Fredrickson; James M Tiedje
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-31       Impact factor: 11.205

4.  coliBASE: an online database for Escherichia coli, Shigella and Salmonella comparative genomics.

Authors:  Roy R Chaudhuri; Arshad M Khan; Mark J Pallen
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

5.  Validating annotations for uncharacterized proteins in Shewanella oneidensis.

Authors:  Brenton Louie; Peter Tarczy-Hornoch; Roger Higdon; Eugene Kolker
Journal:  OMICS       Date:  2008-09

6.  Identification and functional analysis of 'hypothetical' genes expressed in Haemophilus influenzae.

Authors:  Eugene Kolker; Kira S Makarova; Svetlana Shabalina; Alex F Picone; Samuel Purvine; Ted Holzman; Tim Cherny; David Armbruster; Robert S Munson; Grigory Kolesov; Dmitrij Frishman; Michael Y Galperin
Journal:  Nucleic Acids Res       Date:  2004-04-30       Impact factor: 16.971

7.  The orphan gene ybjN conveys pleiotropic effects on multicellular behavior and survival of Escherichia coli.

Authors:  Dongping Wang; Bernarda Calla; Sornkanok Vimolmangkang; Xia Wu; Schuyler S Korban; Steven C Huber; Steven J Clough; Youfu Zhao
Journal:  PLoS One       Date:  2011-09-27       Impact factor: 3.240

8.  A functional update of the Escherichia coli K-12 genome.

Authors:  M H Serres; S Gopal; L A Nahum; P Liang; T Gaasterland; M Riley
Journal:  Genome Biol       Date:  2001-08-20       Impact factor: 13.583

9.  A statistical model of protein sequence similarity and function similarity reveals overly-specific function predictions.

Authors:  Brenton Louie; Roger Higdon; Eugene Kolker
Journal:  PLoS One       Date:  2009-10-21       Impact factor: 3.240

10.  Gene fusions and gene duplications: relevance to genomic annotation and functional analysis.

Authors:  Margrethe H Serres; Monica Riley
Journal:  BMC Genomics       Date:  2005-03-09       Impact factor: 3.969
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