Literature DB >> 10679466

Single-stranded-RNA binding proteins.

A A Antson1.   

Abstract

Our knowledge of protein interactions with RNA molecules has been, so far, largely restricted to cases in which the RNA itself is folded into a secondary and/or tertiary structure stabilised by intramolecular base pairing and stacking. Until recently, only limited structural information has been available about protein interactions with single-stranded RNA. A breakthrough in our understanding of these interactions came in 1999, with the determination of four crystal structures of protein complexes with extended single-stranded RNA molecules. These structures revealed wonderfully satisfying patterns of the ability of proteins to accommodate RNA bases, with the sugar-phosphate backbone often adopting conformations that are different from the classical double helix.

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Year:  2000        PMID: 10679466     DOI: 10.1016/s0959-440x(99)00054-8

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  22 in total

1.  Molecular dynamics simulation of the human U2B" protein complex with U2 snRNA hairpin IV in aqueous solution.

Authors:  J X Guo ; W H Gmeiner
Journal:  Biophys J       Date:  2001-08       Impact factor: 4.033

2.  Structure and function of the PWI motif: a novel nucleic acid-binding domain that facilitates pre-mRNA processing.

Authors:  Blair R Szymczyna; John Bowman; Susan McCracken; Antonio Pineda-Lucena; Ying Lu; Brian Cox; Mark Lambermon; Brenton R Graveley; Cheryl H Arrowsmith; Benjamin J Blencowe
Journal:  Genes Dev       Date:  2003-02-15       Impact factor: 11.361

Review 3.  Nucleic acid recognition by OB-fold proteins.

Authors:  Douglas L Theobald; Rachel M Mitton-Fry; Deborah S Wuttke
Journal:  Annu Rev Biophys Biomol Struct       Date:  2003-02-18

4.  Substitution of an essential adenine in the U1A-RNA complex with a non-polar isostere.

Authors:  Jacob B Tuite; Jerome C Shiels; Anne M Baranger
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

5.  Structure of the La motif: a winged helix domain mediates RNA binding via a conserved aromatic patch.

Authors:  Gang Dong; Ghadiyaram Chakshusmathi; Sandra L Wolin; Karin M Reinisch
Journal:  EMBO J       Date:  2004-02-19       Impact factor: 11.598

Review 6.  Influence of RNA secondary structure on the pre-mRNA splicing process.

Authors:  Emanuele Buratti; Francisco E Baralle
Journal:  Mol Cell Biol       Date:  2004-12       Impact factor: 4.272

7.  RNA-binding protein RBMS3 is expressed in activated hepatic stellate cells and liver fibrosis and increases expression of transcription factor Prx1.

Authors:  Dillon Fritz; Branko Stefanovic
Journal:  J Mol Biol       Date:  2007-06-09       Impact factor: 5.469

8.  Prediction of interacting single-stranded RNA bases by protein-binding patterns.

Authors:  Alexandra Shulman-Peleg; Maxim Shatsky; Ruth Nussinov; Haim J Wolfson
Journal:  J Mol Biol       Date:  2008-03-28       Impact factor: 5.469

9.  The role of RNA structure in the interaction of U1A protein with U1 hairpin II RNA.

Authors:  Michael J Law; Andrew J Rice; Patti Lin; Ite A Laird-Offringa
Journal:  RNA       Date:  2006-05-31       Impact factor: 4.942

10.  RNA immunoprecipitation and microarray analysis show a chloroplast Pentatricopeptide repeat protein to be associated with the 5' region of mRNAs whose translation it activates.

Authors:  Christian Schmitz-Linneweber; Rosalind Williams-Carrier; Alice Barkan
Journal:  Plant Cell       Date:  2005-09-02       Impact factor: 11.277

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