Literature DB >> 10679345

Structural energetics of protein folding and binding.

S P Edgcomb1, K P Murphy.   

Abstract

Structural energetics is a method for calculating the energetics of protein folding and binding reactions as a function of temperature. This approach allows measured energetics to be interpreted with regards to the protein structure and the prediction of energetics from known structures. Recent advances include improvements in the parameterization of enthalpy, entropy and heat capacity terms and new applications, especially with regards to understanding dynamic properties of proteins and how these are affected by ligand binding.

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Year:  2000        PMID: 10679345     DOI: 10.1016/s0958-1669(99)00055-5

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  12 in total

1.  Biophysical basis of the promiscuous binding of B-cell lymphoma protein 2 apoptotic repressor to BH3 ligands.

Authors:  Vikas Bhat; Max B Olenick; Brett J Schuchardt; David C Mikles; Caleb B McDonald; Amjad Farooq
Journal:  J Mol Recognit       Date:  2013-10       Impact factor: 2.137

2.  Role of promoter DNA sequence variations on the binding of EGR1 transcription factor.

Authors:  David C Mikles; Brett J Schuchardt; Vikas Bhat; Caleb B McDonald; Amjad Farooq
Journal:  Arch Biochem Biophys       Date:  2014-03-18       Impact factor: 4.013

3.  Molecular determinants of the binding specificity of BH3 ligands to BclXL apoptotic repressor.

Authors:  Vikas Bhat; Max B Olenick; Brett J Schuchardt; David C Mikles; Caleb B McDonald; Amjad Farooq
Journal:  Biopolymers       Date:  2014-06       Impact factor: 2.505

4.  Thermodynamic characterization of the interaction between TRAF2 and tumor necrosis factor receptor peptides by isothermal titration calorimetry.

Authors:  H Ye; H Wu
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-01       Impact factor: 11.205

Review 5.  Benchmarking B-cell epitope prediction for the design of peptide-based vaccines: problems and prospects.

Authors:  Salvador Eugenio C Caoili
Journal:  J Biomed Biotechnol       Date:  2010-03-30

6.  Allostery mediates ligand binding to Grb2 adaptor in a mutually exclusive manner.

Authors:  Caleb B McDonald; Jimmy El Hokayem; Nawal Zafar; Jordan E Balke; Vikas Bhat; David C Mikles; Brian J Deegan; Kenneth L Seldeen; Amjad Farooq
Journal:  J Mol Recognit       Date:  2013-02       Impact factor: 2.137

7.  Structural energetics of protein-carbohydrate interactions: Insights derived from the study of lysozyme binding to its natural saccharide inhibitors.

Authors:  Enrique García-Hernández; Rafael A Zubillaga; Eneas A Chavelas-Adame; Edgar Vázquez-Contreras; Arturo Rojo-Domínguez; Miguel Costas
Journal:  Protein Sci       Date:  2003-01       Impact factor: 6.725

8.  Evidence that the bZIP domains of the Jun transcription factor bind to DNA as monomers prior to folding and homodimerization.

Authors:  Kenneth L Seldeen; Caleb B McDonald; Brian J Deegan; Amjad Farooq
Journal:  Arch Biochem Biophys       Date:  2008-10-12       Impact factor: 4.013

9.  Structurally homologous all beta-barrel proteins adopt different mechanisms of folding.

Authors:  Thiagarajan Srimathi; Thallampuranam Krishnaswamy S Kumar; Karuppanan Muthusamy Kathir; Ya-Hui Chi; Sampath Srisailam; Wann-Yin Lin; Ing-Ming Chiu; Chin Yu
Journal:  Biophys J       Date:  2003-07       Impact factor: 4.033

10.  On the meaning of affinity limits in B-cell epitope prediction for antipeptide antibody-mediated immunity.

Authors:  Salvador Eugenio C Caoili
Journal:  Adv Bioinformatics       Date:  2012-11-14
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