Literature DB >> 10673014

Three views of microbial genomes.

L J Jensen1, C Friis, D W Ussery.   

Abstract

We describe here GenomeAtlases as a method for visualising three different aspects of complete microbial chromosomes: repeats, DNA structural characteristics, and base composition. We have applied this method to all publicly available genomes, and find a general strand preference of global repeats. The atlas for the Mycoplasma genitalium genome is presented as an example, and results from all three views are consistent with known characteristics of the genome.

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Year:  1999        PMID： 10673014     DOI： 10.1016/s0923-2508(99)00116-3

Source DB:  PubMed          Journal:  Res Microbiol        ISSN： 0923-2508            Impact factor:   3.992


  16 in total

1.  Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima.

Authors:  P Worning; L J Jensen; K E Nelson; S Brunak; D W Ussery
Journal:  Nucleic Acids Res       Date:  2000-02-01       Impact factor: 16.971

2.  Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM.

Authors:  Eric Altermann; W Michael Russell; M Andrea Azcarate-Peril; Rodolphe Barrangou; B Logan Buck; Olivia McAuliffe; Nicole Souther; Alleson Dobson; Tri Duong; Michael Callanan; Sonja Lick; Alice Hamrick; Raul Cano; Todd R Klaenhammer
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-25       Impact factor: 11.205

3.  Comparative genomics of green sulfur bacteria.

Authors:  Colin Davenport; David W Ussery; Burkhard Tümmler
Journal:  Photosynth Res       Date:  2010-01-23       Impact factor: 3.573

4.  Genome-wide analysis of ruminant Staphylococcus aureus reveals diversification of the core genome.

Authors:  Nouri L Ben Zakour; Daniel E Sturdevant; Sergine Even; Caitriona M Guinane; Corinne Barbey; Priscila D Alves; Marie-Françoise Cochet; Michel Gautier; Michael Otto; J Ross Fitzgerald; Yves Le Loir
Journal:  J Bacteriol       Date:  2008-06-20       Impact factor: 3.490

5.  The genome sequence of the rumen methanogen Methanobrevibacter ruminantium reveals new possibilities for controlling ruminant methane emissions.

Authors:  Sinead C Leahy; William J Kelly; Eric Altermann; Ron S Ronimus; Carl J Yeoman; Diana M Pacheco; Dong Li; Zhanhao Kong; Sharla McTavish; Carrie Sang; Suzanne C Lambie; Peter H Janssen; Debjit Dey; Graeme T Attwood
Journal:  PLoS One       Date:  2010-01-28       Impact factor: 3.240

6.  Genomic characterization of Campylobacter jejuni strain M1.

Authors:  Carsten Friis; Trudy M Wassenaar; Muhammad A Javed; Lars Snipen; Karin Lagesen; Peter F Hallin; Diane G Newell; Monique Toszeghy; Anne Ridley; Georgina Manning; David W Ussery
Journal:  PLoS One       Date:  2010-08-26       Impact factor: 3.240

7.  Sequence analysis of three mitochondrial DNA molecules reveals interesting differences among Saccharomyces yeasts.

Authors:  R B Langkjaer; S Casaregola; D W Ussery; C Gaillardin; J Piskur
Journal:  Nucleic Acids Res       Date:  2003-06-15       Impact factor: 16.971

8.  Complete genome sequence of the marine planctomycete Pirellula sp. strain 1.

Authors:  F O Glöckner; M Kube; M Bauer; H Teeling; T Lombardot; W Ludwig; D Gade; A Beck; K Borzym; K Heitmann; R Rabus; H Schlesner; R Amann; R Reinhardt
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-30       Impact factor: 12.779

Review 9.  The Salmonella enterica pan-genome.

Authors:  Annika Jacobsen; Rene S Hendriksen; Frank M Aaresturp; David W Ussery; Carsten Friis
Journal:  Microb Ecol       Date:  2011-06-04       Impact factor: 4.552

10.  CMG-biotools, a free workbench for basic comparative microbial genomics.

Authors:  Tammi Vesth; Karin Lagesen; Öncel Acar; David Ussery
Journal:  PLoS One       Date:  2013-04-05       Impact factor: 3.240
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