Literature DB >> 10673009

Short repeats and IS elements in the extremely radiation-resistant bacterium Deinococcus radiodurans and comparison to other bacterial species.

K S Makarova1, Y I Wolf, O White, K Minton, M J Daly.   

Abstract

Computer analysis of the complete genome of Deinococcus radiodurans R1 has shown that the number of insertion sequences (ISs) and small noncoding repeats (SNRs) it contains is very high, and comparable with those of Escherichia coli. IS elements and several families of SNRs are described, together with their possible function in the D. radiodurans genome.

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Year:  1999        PMID： 10673009     DOI： 10.1016/s0923-2508(99)00121-7

Source DB:  PubMed          Journal:  Res Microbiol        ISSN： 0923-2508            Impact factor:   3.992


  9 in total

1.  Lineage-specific gene expansions in bacterial and archaeal genomes.

Authors:  I K Jordan; K S Makarova; J L Spouge; Y I Wolf; E V Koonin
Journal:  Genome Res       Date:  2001-04       Impact factor: 9.043

Review 2.  Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics.

Authors:  K S Makarova; L Aravind; Y I Wolf; R L Tatusov; K W Minton; E V Koonin; M J Daly
Journal:  Microbiol Mol Biol Rev       Date:  2001-03       Impact factor: 11.056

Review 3.  Oxidative stress resistance in Deinococcus radiodurans.

Authors:  Dea Slade; Miroslav Radman
Journal:  Microbiol Mol Biol Rev       Date:  2011-03       Impact factor: 11.056

4.  RecA Protein from the extremely radioresistant bacterium Deinococcus radiodurans: expression, purification, and characterization.

Authors:  Jong-Il Kim; Ajay K Sharma; Stephen N Abbott; Elizabeth A Wood; David W Dwyer; Aaron Jambura; Kenneth W Minton; Ross B Inman; Michael J Daly; Michael M Cox
Journal:  J Bacteriol       Date:  2002-03       Impact factor: 3.490

5.  Synonymous codon usage bias dependent on local nucleotide context in the class Deinococci.

Authors:  Robert W Cutler; Panuwan Chantawannakul
Journal:  J Mol Evol       Date:  2008-08-12       Impact factor: 2.395

6.  Characterization of gross genome rearrangements in Deinococcus radiodurans recA mutants.

Authors:  Jelena Repar; Davor Zahradka; Ivan Sović; Ksenija Zahradka
Journal:  Sci Rep       Date:  2021-05-25       Impact factor: 4.379

Review 7.  Bacterial repetitive extragenic palindromic sequences are DNA targets for Insertion Sequence elements.

Authors:  Raquel Tobes; Eduardo Pareja
Journal:  BMC Genomics       Date:  2006-03-24       Impact factor: 3.969

8.  Elevated Rate of Genome Rearrangements in Radiation-Resistant Bacteria.

Authors:  Jelena Repar; Fran Supek; Tin Klanjscek; Tobias Warnecke; Ksenija Zahradka; Davor Zahradka
Journal:  Genetics       Date:  2017-02-10       Impact factor: 4.562

9.  Deinococcus geothermalis: the pool of extreme radiation resistance genes shrinks.

Authors:  Kira S Makarova; Marina V Omelchenko; Elena K Gaidamakova; Vera Y Matrosova; Alexander Vasilenko; Min Zhai; Alla Lapidus; Alex Copeland; Edwin Kim; Miriam Land; Konstantinos Mavrommatis; Samuel Pitluck; Paul M Richardson; Chris Detter; Thomas Brettin; Elizabeth Saunders; Barry Lai; Bruce Ravel; Kenneth M Kemner; Yuri I Wolf; Alexander Sorokin; Anna V Gerasimova; Mikhail S Gelfand; James K Fredrickson; Eugene V Koonin; Michael J Daly
Journal:  PLoS One       Date:  2007-09-26       Impact factor: 3.240
  9 in total

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