Literature DB >> 10673002

Short palindromic repetitive DNA elements in enterobacteria: a survey.

S Bachellier1, J M Clément, M Hofnung.   

Abstract

We present a survey of short palindromic repetitive elements in enterobacteria. Seven families are presented. Five were already known (RSA, IRU, 29-bp repeats, BIMEs and boxC), and their properties are updated; in particular, a new composite element is shown to include the formerly identified boxC repeats. Two repetitions, YPAL1 and YPAL2, found primarily in Yersinia, are described here for the first time.

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Year:  1999        PMID： 10673002     DOI： 10.1016/s0923-2508(99)00128-x

Source DB:  PubMed          Journal:  Res Microbiol        ISSN： 0923-2508            Impact factor:   3.992


  45 in total

1.  Protein coding palindromes are a unique but recurrent feature in Rickettsia.

Authors:  Hiroyuki Ogata; Stéphane Audic; Chantal Abergel; Pierre-Edouard Fournier; Jean-Michel Claverie
Journal:  Genome Res       Date:  2002-05       Impact factor: 9.043

2.  Formation of large palindromic DNA by homologous recombination of short inverted repeat sequences in Saccharomyces cerevisiae.

Authors:  David K Butler; David Gillespie; Brandi Steele
Journal:  Genetics       Date:  2002-07       Impact factor: 4.562

3.  Transposition of IS1397 in the family Enterobacteriaceae and first characterization of ISKpn1, a new insertion sequence associated with Klebsiella pneumoniae palindromic units.

Authors:  C Wilde; S Bachellier; M Hofnung; J M Clément
Journal:  J Bacteriol       Date:  2001-08       Impact factor: 3.490

4.  Fur and the novel regulator YqjI control transcription of the ferric reductase gene yqjH in Escherichia coli.

Authors:  Suning Wang; Yun Wu; F Wayne Outten
Journal:  J Bacteriol       Date:  2010-11-19       Impact factor: 3.490

Review 5.  Breaking and joining single-stranded DNA: the HUH endonuclease superfamily.

Authors:  Michael Chandler; Fernando de la Cruz; Fred Dyda; Alison B Hickman; Gabriel Moncalian; Bao Ton-Hoang
Journal:  Nat Rev Microbiol       Date:  2013-07-08       Impact factor: 60.633

6.  Duplication frequency in a population of Salmonella enterica rapidly approaches steady state with or without recombination.

Authors:  Andrew B Reams; Eric Kofoid; Michael Savageau; John R Roth
Journal:  Genetics       Date:  2010-01-18       Impact factor: 4.562

7.  Very small mobile repeated elements in cyanobacterial genomes.

Authors:  Jeff Elhai; Michiko Kato; Sarah Cousins; Peter Lindblad; José Luis Costa
Journal:  Genome Res       Date:  2008-07-03       Impact factor: 9.043

8.  Enterobacterial repetitive intergenic consensus sequence repeats in yersiniae: genomic organization and functional properties.

Authors:  Eliana De Gregorio; Giustina Silvestro; Mauro Petrillo; Maria Stella Carlomagno; Pier Paolo Di Nocera
Journal:  J Bacteriol       Date:  2005-12       Impact factor: 3.490

9.  The tandem inversion duplication in Salmonella enterica: selection drives unstable precursors to final mutation types.

Authors:  Elisabeth Kugelberg; Eric Kofoid; Dan I Andersson; Yong Lu; Joseph Mellor; Frederick P Roth; John R Roth
Journal:  Genetics       Date:  2010-03-09       Impact factor: 4.562

10.  Palindromic unit-independent transposition of IS1397 in Yersinia pestis.

Authors:  Caroline Wilde; Sophie Bachellier; Maurice Hofnung; Elisabeth Carniel; Jean-Marie Clément
Journal:  J Bacteriol       Date:  2002-09       Impact factor: 3.490
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