Literature DB >> 10667801

Design of single-layer beta-sheets without a hydrophobic core.

S Koide1, X Huang, K Link, A Koide, Z Bu, D M Engelman.   

Abstract

The hydrophobic effect is the main thermodynamic driving force in the folding of water-soluble proteins. Exclusion of nonpolar moieties from aqueous solvent results in the formation of a hydrophobic core in a protein, which has been generally considered essential for specifying and stabilizing the folded structures of proteins. Outer surface protein A (OspA) from Borrelia burgdorferi contains a three-stranded beta-sheet segment which connects two globular domains. Although this single-layer beta-sheet segment is exposed to solvent on both faces and thus does not contain a hydrophobic core, the segment has a high conformational stability. Here we report the engineering of OspA variants that contain larger single-layer beta-sheets (comprising five and seven beta-strands) by duplicating a beta-hairpin unit within the beta-sheet. Nuclear magnetic resonance and small-angle X-ray scattering analyses reveal that these extended single-layer beta-sheets are formed as designed, and amide hydrogen-deuterium exchange and chemical denaturation show that they are stable. Thus, interactions within the beta-hairpin unit and those between adjacent units, which do not involve the formation of a hydrophobic core, are sufficient to specify and stabilize the single-layer beta-sheet structure. Our results provide an expanded view of protein folding, misfolding and design.

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Year:  2000        PMID: 10667801     DOI: 10.1038/35000255

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  11 in total

1.  Atomic-resolution crystal structure of Borrelia burgdorferi outer surface protein A via surface engineering.

Authors:  Koki Makabe; Valentina Tereshko; Grzegorz Gawlak; Shude Yan; Shohei Koide
Journal:  Protein Sci       Date:  2006-07-05       Impact factor: 6.725

2.  Sequential reorganization of beta-sheet topology by insertion of a single strand.

Authors:  Martin Sagermann; Walter A Baase; Brian W Matthews
Journal:  Protein Sci       Date:  2006-04-05       Impact factor: 6.725

3.  Atomic structures of peptide self-assembly mimics.

Authors:  Koki Makabe; Dan McElheny; Valentia Tereshko; Aaron Hilyard; Grzegorz Gawlak; Shude Yan; Akiko Koide; Shohei Koide
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-08       Impact factor: 11.205

4.  High-resolution structure of a self-assembly-competent form of a hydrophobic peptide captured in a soluble beta-sheet scaffold.

Authors:  Koki Makabe; Matthew Biancalana; Shude Yan; Valentina Tereshko; Grzegorz Gawlak; Hélène Miller-Auer; Stephen C Meredith; Shohei Koide
Journal:  J Mol Biol       Date:  2008-03-04       Impact factor: 5.469

5.  Conserved TCP domain of Sas-4/CPAP is essential for pericentriolar material tethering during centrosome biogenesis.

Authors:  Xiangdong Zheng; Li Ming Gooi; Arpit Wason; Elke Gabriel; Narges Zare Mehrjardi; Qian Yang; Xingrun Zhang; Alain Debec; Marcus L Basiri; Tomer Avidor-Reiss; Andrei Pozniakovsky; Ina Poser; Tomo Saric; Anthony A Hyman; Haitao Li; Jay Gopalakrishnan
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-02       Impact factor: 11.205

6.  The roles of turn formation and cross-strand interactions in fibrillization of peptides derived from the OspA single-layer beta-sheet.

Authors:  S Ohnishi; A Koide; S Koide
Journal:  Protein Sci       Date:  2001-10       Impact factor: 6.725

7.  Lyophilized silk fibroin hydrogels for the sustained local delivery of therapeutic monoclonal antibodies.

Authors:  Nicholas Guziewicz; Annie Best; Bernardo Perez-Ramirez; David L Kaplan
Journal:  Biomaterials       Date:  2011-01-08       Impact factor: 12.479

8.  Hydrophobic surface burial is the major stability determinant of a flat, single-layer beta-sheet.

Authors:  Shude Yan; Grzegorz Gawlak; Koki Makabe; Valentina Tereshko; Akiko Koide; Shohei Koide
Journal:  J Mol Biol       Date:  2007-02-07       Impact factor: 5.469

9.  Aromatic cross-strand ladders control the structure and stability of beta-rich peptide self-assembly mimics.

Authors:  Matthew Biancalana; Koki Makabe; Akiko Koide; Shohei Koide
Journal:  J Mol Biol       Date:  2008-08-22       Impact factor: 5.469

10.  Macrocyclic beta-sheet peptides that mimic protein quaternary structure through intermolecular beta-sheet interactions.

Authors:  Omid Khakshoor; Borries Demeler; James S Nowick
Journal:  J Am Chem Soc       Date:  2007-04-10       Impact factor: 15.419

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