Literature DB >> 10661549

Condensed representation of DNA primary sequences.

M Randić1.   

Abstract

With rapid reporting of DNA sequences derived from automated DNA sequencing techniques, the problem of reviewing and ordering such information has become acute. We have introduced a condensed representation of primary sequences of DNA that offers an alternative method of registering DNA. The advantage of the condensed codes for DNA is that it not only offers fast, qualitative comparisons of DNA but also allows quantitative comparisons of DNA from different sources. The approach is outlined for a particular human beta globin sequence extract. Using the condensed representation of the primary DNA sequences, comparisons are made between primary sequences for Exon 1 of human beta globin and seven other beta globins.

Entities:  

Mesh:

Substances:

Year:  2000        PMID: 10661549     DOI: 10.1021/ci990084z

Source DB:  PubMed          Journal:  J Chem Inf Comput Sci        ISSN: 0095-2338


  10 in total

1.  Protein sequence analysis based on hydropathy profile of amino acids.

Authors:  Xiao-li Xie; Li-fei Zheng; Ying Yu; Li-ping Liang; Man-cai Guo; John Song; Zhi-fa Yuan
Journal:  J Zhejiang Univ Sci B       Date:  2012-02       Impact factor: 3.066

2.  A weighted measure for the similarity analysis of DNA sequences.

Authors:  Na Liu; Tianming Wang
Journal:  J Mol Model       Date:  2006-03-28       Impact factor: 1.810

3.  A novel model for DNA sequence similarity analysis based on graph theory.

Authors:  Xingqin Qi; Qin Wu; Yusen Zhang; Eddie Fuller; Cun-Quan Zhang
Journal:  Evol Bioinform Online       Date:  2011-10-04       Impact factor: 1.625

4.  Numerical characterization of DNA sequence based on dinucleotides.

Authors:  Xingqin Qi; Edgar Fuller; Qin Wu; Cun-Quan Zhang
Journal:  ScientificWorldJournal       Date:  2012-04-24

5.  Sequence comparison via polar coordinates representation and curve tree.

Authors:  Qi Dai; Xiaodong Guo; Lihua Li
Journal:  J Theor Biol       Date:  2011-10-06       Impact factor: 2.691

6.  New method for comparing DNA primary sequences based on a discrimination measure.

Authors:  Jie Feng; Yong Hu; Ping Wan; Aibing Zhang; Weizhong Zhao
Journal:  J Theor Biol       Date:  2010-08-03       Impact factor: 2.691

7.  Natural/random protein classification models based on star network topological indices.

Authors:  Cristian Robert Munteanu; Humberto González-Díaz; Fernanda Borges; Alexandre Lopes de Magalhães
Journal:  J Theor Biol       Date:  2008-07-22       Impact factor: 2.691

8.  Coronavirus phylogeny based on triplets of nucleic acids bases.

Authors:  Bo Liao; Yanshu Liu; Renfa Li; Wen Zhu
Journal:  Chem Phys Lett       Date:  2006-02-20       Impact factor: 2.328

9.  Multi-target QPDR classification model for human breast and colon cancer-related proteins using star graph topological indices.

Authors:  Cristian Robert Munteanu; Alexandre L Magalhães; Eugenio Uriarte; Humberto González-Díaz
Journal:  J Theor Biol       Date:  2008-12-06       Impact factor: 2.691

10.  New 3D graphical representation of DNA sequence based on dual nucleotides.

Authors:  Xiao-Qin Qi; Jie Wen; Zhao-Hui Qi
Journal:  J Theor Biol       Date:  2007-09-01       Impact factor: 2.691

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.