Literature DB >> 10643759

Statistical model building and model criticism for human circadian data.

E N Brown1, H Luithardt.   

Abstract

Mathematical models have played an important role in the analysis of circadian systems. The models include simulation of differential equation systems to assess the dynamic properties of a circadian system and the use of statistical models, primarily harmonic regression methods, to assess the static properties of the system. The dynamical behaviors characterized by the simulation studies are the response of the circadian pacemaker to light, its rate of decay to its limit cycle, and its response to the rest-activity cycle. The static properties are phase, amplitude, and period of the intrinsic oscillator. Formal statistical methods are not routinely employed in simulation studies, and therefore the uncertainty in inferences based on the differential equation models and their sensitivity to model specification and parameter estimation error cannot be evaluated. The harmonic regression models allow formal statistical analysis of static but not dynamical features of the circadian pacemaker. The authors present a paradigm for analyzing circadian data based on the Box iterative scheme for statistical model building. The paradigm unifies the differential equation-based simulations (direct problem) and the model fitting approach using harmonic regression techniques (inverse problem) under a single schema. The framework is illustrated with the analysis of a core-temperature data series collected under a forced desynchrony protocol. The Box iterative paradigm provides a framework for systematically constructing and analyzing models of circadian data.

Entities:  

Keywords:  NASA Discipline Space Human Factors; NASA Program Biomedical Research and Countermeasures; Non-NASA Center

Mesh:

Year:  1999        PMID: 10643759     DOI: 10.1177/074873099129000975

Source DB:  PubMed          Journal:  J Biol Rhythms        ISSN: 0748-7304            Impact factor:   3.182


  4 in total

1.  A Comparison of Two-Stage Approaches for Fitting Nonlinear Ordinary Differential Equation Models with Mixed Effects.

Authors:  Sy-Miin Chow; Jason J Bendezú; Pamela M Cole; Nilam Ram
Journal:  Multivariate Behav Res       Date:  2016 Mar-Jun       Impact factor: 5.923

2.  What's for dynr: A Package for Linear and Nonlinear Dynamic Modeling in R.

Authors:  Lu Ou; Michael D Hunter; Sy-Miin Chow
Journal:  R J       Date:  2019-06       Impact factor: 3.984

Review 3.  Mathematical modeling of circadian rhythms.

Authors:  Ameneh Asgari-Targhi; Elizabeth B Klerman
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2018-10-17

4.  Fitting Nonlinear Ordinary Differential Equation Models with Random Effects and Unknown Initial Conditions Using the Stochastic Approximation Expectation-Maximization (SAEM) Algorithm.

Authors:  Sy-Miin Chow; Zhaohua Lu; Andrew Sherwood; Hongtu Zhu
Journal:  Psychometrika       Date:  2014-11-22       Impact factor: 2.500

  4 in total

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