Literature DB >> 10631682

The EMBL Nucleotide Sequence Database. Contributing and accessing data.

P Hingamp1, A E van den Broek, G Stoesser, W Baker.   

Abstract

The European Molecular Biology Laboratory Nucleotide Sequence Database receives sequence and sequence annotation data from genome projects, sequencing centers, individual scientists, and patent offices. Data may be most efficiently submitted to the database using the Internet based submission tool WEBIN or via previously established genome project accounts. Biologist curators will review the data and provide accession numbers within two working days. Non-confidential data are exchanged daily in an international collaboration between EMBL. DDBJ (the DNA Databank of Japan) and GenBank (USA) and may be accessed and retrieved via the Internet with the Sequence Retrieval System (SRS). Sequence database searching algorithms (e.g., Blitz, Fasta, Blast) are available for comparison of query to database sequences.

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Year:  1999        PMID: 10631682     DOI: 10.1385/MB:12:3:255

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  6 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

2.  The EMBL Nucleotide Sequence Database.

Authors:  G Stoesser; M A Tuli; R Lopez; P Sterk
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

3.  SRS: information retrieval system for molecular biology data banks.

Authors:  T Etzold; A Ulyanov; P Argos
Journal:  Methods Enzymol       Date:  1996       Impact factor: 1.600

Review 4.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

5.  Using the FASTA program to search protein and DNA sequence databases.

Authors:  W R Pearson
Journal:  Methods Mol Biol       Date:  1994

6.  Identification of common molecular subsequences.

Authors:  T F Smith; M S Waterman
Journal:  J Mol Biol       Date:  1981-03-25       Impact factor: 5.469

  6 in total
  5 in total

1.  Use of Mathematical Methods for the Biosafety Assessment of Agricultural Crops.

Authors:  E V Korotkov; I V Yakovleva; A M Kamionskaya
Journal:  Appl Biochem Microbiol       Date:  2021-03-12       Impact factor: 0.886

2.  Recombinant expression and characterization of a novel endoglucanase from Bacillus subtilis in Escherichia coli.

Authors:  Muddassar Zafar; Sibtain Ahmed; Muhammad Imran Mahmood Khan; Amer Jamil
Journal:  Mol Biol Rep       Date:  2014-02-04       Impact factor: 2.316

3.  Whole genome sequencing of Chinese clearhead icefish, Protosalanx hyalocranius.

Authors:  Kai Liu; Dongpo Xu; Jia Li; Chao Bian; Jinrong Duan; Yanfeng Zhou; Minying Zhang; Xinxin You; Yang You; Jieming Chen; Hui Yu; Gangchun Xu; Di-An Fang; Jun Qiang; Shulun Jiang; Jie He; Junmin Xu; Qiong Shi; Zhiyong Zhang; Pao Xu
Journal:  Gigascience       Date:  2017-04-01       Impact factor: 6.524

4.  Draft genome of the protandrous Chinese black porgy, Acanthopagrus schlegelii.

Authors:  Zhiyong Zhang; Kai Zhang; Shuyin Chen; Zhiwei Zhang; Jinyong Zhang; Xinxin You; Chao Bian; Jin Xu; Chaofeng Jia; Jun Qiang; Fei Zhu; Hongxia Li; Hailin Liu; Dehua Shen; Zhonghong Ren; Jieming Chen; Jia Li; Tianheng Gao; Ruobo Gu; Junmin Xu; Qiong Shi; Pao Xu
Journal:  Gigascience       Date:  2018-04-01       Impact factor: 6.524

Review 5.  Considerations and best practices in animal science 16S ribosomal RNA gene sequencing microbiome studies.

Authors:  Margaret D Weinroth; Aeriel D Belk; Chris Dean; Noelle Noyes; Dana K Dittoe; Michael J Rothrock; Steven C Ricke; Phillip R Myer; Madison T Henniger; Gustavo A Ramírez; Brian B Oakley; Katie Lynn Summers; Asha M Miles; Taylor B Ault-Seay; Zhongtang Yu; Jessica L Metcalf; James E Wells
Journal:  J Anim Sci       Date:  2022-02-01       Impact factor: 3.159

  5 in total

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