Literature DB >> 10629950

Disaccharide conformational maps: how adiabatic is an adiabatic map?

C A Stortz1.   

Abstract

The 'adiabatic' (phi, psi) potential-energy surface of the disaccharide alpha-D-galactopyranosyl-(1-->3)-beta-D-galactopyranose was obtained by several established methods, using the MM3 molecular mechanics force field. The constrained minimizations throughout the whole grid were carried out using sharply different dielectric constants. The attainment of the 'true' adiabatic map is very difficult due to the 'multiple minimum problem', originating in the large number of exocyclic pendant groups present in a disaccharide. However, these results suggest that at low dielectric constants, the usual approach starting with conformers carrying cooperative hydrogen bonds results in a good approximation to the true adiabatic map, while at high dielectric constants this approach fails due to the damping of electrostatic and hydrogen-bonding interactions.

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Year:  1999        PMID: 10629950     DOI: 10.1016/s0008-6215(99)00207-4

Source DB:  PubMed          Journal:  Carbohydr Res        ISSN: 0008-6215            Impact factor:   2.104


  4 in total

1.  NMR and conformational studies of linear and cyclic oligo-(1→6)-β-D-glucosamines.

Authors:  Alexey A Grachev; Alexey G Gerbst; Marina L Gening; Denis V Titov; Olga N Yudina; Yury E Tsvetkov; Alexander S Shashkov; Gerald B Pier; Nikolay E Nifantiev
Journal:  Carbohydr Res       Date:  2011-09-05       Impact factor: 2.104

Review 2.  Bioinformatics and molecular modeling in glycobiology.

Authors:  Martin Frank; Siegfried Schloissnig
Journal:  Cell Mol Life Sci       Date:  2010-04-04       Impact factor: 9.261

3.  Density functional conformational study of 2-O-sulfated 3,6 anhydro-α-D-galactose and of neo-κ- and ι-carrabiose molecules in gas phase and water.

Authors:  Noreya Bestaoui-Berrekhchi-Berrahma; Philippe Derreumaux; Majda Sekkal-Rahal; Michael Springborg; Adlane Sayede; Noureddine Yousfi; Abd-Ed-Daim Kadoun
Journal:  J Mol Model       Date:  2012-10-20       Impact factor: 1.810

4.  GlycoMapsDB: a database of the accessible conformational space of glycosidic linkages.

Authors:  M Frank; T Lütteke; C-W von der Lieth
Journal:  Nucleic Acids Res       Date:  2007-01       Impact factor: 16.971

  4 in total

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