Literature DB >> 10625485

Binding of 2-naphthols to D38E mutants of 3-oxo-Delta 5-steroid isomerase: variation of ligand ionization state with the nature of the electrophilic component.

I P Petrounia1, G Blotny, R M Pollack.   

Abstract

3-Oxo-Delta(5)-steroid isomerase (KSI) catalyzes the isomerization of a variety of 3-oxo-Delta(5)-steroids to their conjugated Delta(4) isomers. The mechanism involves sequential enolization and ketonization, with Asp-38 acting to transfer a proton from C-4 to C-6 through a dienol(ate) intermediate. We have previously proposed that this intermediate is anionic, with stabilization provided from direct hydrogen bonding from Tyr-14 and Asp-99 to the oxygen of the steroid. In this work, we analyze the binding of substituted 2-naphthols, which are analogues of the intermediate dienol, to the D38E KSI mutant and the corresponding double mutants lacking one of the two electrophilic groups (D38E/Y14F and D38E/D99A). The binding of these naphthols to the mutant KSIs at pH 7 is described by the modified Bronsted equation: log K(D) = alpha(pK(a)) + constant, where K(D) is the dissociation constant of the complex. The high value of alpha for D38E (alpha = 0.87 +/- 0.06) indicates that the negative charge in these D38E-naphthol complexes is localized almost exclusively on the bound ligand. In contrast, values of alpha for the double mutants (alpha = 0.28 +/- 0.02 for D38E/Y14F and alpha = 0.25 +/- 0.02 for D38E/D99A) are consistent with very little negative charge on the oxygen of the bound naphthol. Ultraviolet spectra of 5-nitro-2-naphthol and the fluorescence spectra of equilenin bound to these mutants support this interpretation. Extrapolation of these results to the intermediate in the catalytic reaction suggests that for the reaction with D38E, the intermediate is a negatively charged dienolate with hydrogen bonding from both Tyr-14 and Asp-99. Removal of either one of these H-bond donors (Tyr-14 or Asp-99) causes destabilization of the anion and results in a dienol enzyme-intermediate complex rather than a dienolate.

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Year:  2000        PMID: 10625485     DOI: 10.1021/bi9917838

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  9 in total

1.  Hydrogen bonding in the active site of ketosteroid isomerase: electronic inductive effects and hydrogen bond coupling.

Authors:  Philip Hanoian; Paul A Sigala; Daniel Herschlag; Sharon Hammes-Schiffer
Journal:  Biochemistry       Date:  2010-11-12       Impact factor: 3.162

2.  Ketosteroid isomerase provides further support for the idea that enzymes work by electrostatic preorganization.

Authors:  Shina C L Kamerlin; Pankaz K Sharma; Zhen T Chu; Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-11       Impact factor: 11.205

3.  Proton affinity of the oxyanion hole in the active site of ketosteroid isomerase.

Authors:  William Childs; Steven G Boxer
Journal:  Biochemistry       Date:  2010-03-30       Impact factor: 3.162

4.  Water in the active site of ketosteroid isomerase.

Authors:  Philip Hanoian; Sharon Hammes-Schiffer
Journal:  Biochemistry       Date:  2011-07-13       Impact factor: 3.162

5.  Quantitative dissection of hydrogen bond-mediated proton transfer in the ketosteroid isomerase active site.

Authors:  Paul A Sigala; Aaron T Fafarman; Jason P Schwans; Stephen D Fried; Timothy D Fenn; Jose M M Caaveiro; Brandon Pybus; Dagmar Ringe; Gregory A Petsko; Steven G Boxer; Daniel Herschlag
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-24       Impact factor: 11.205

6.  Decomposition of vibrational shifts of nitriles into electrostatic and hydrogen-bonding effects.

Authors:  Aaron T Fafarman; Paul A Sigala; Daniel Herschlag; Steven G Boxer
Journal:  J Am Chem Soc       Date:  2010-09-22       Impact factor: 15.419

7.  Hydrogen bond coupling in the ketosteroid isomerase active site.

Authors:  Paul A Sigala; Jose M M Caaveiro; Dagmar Ringe; Gregory A Petsko; Daniel Herschlag
Journal:  Biochemistry       Date:  2009-07-28       Impact factor: 3.162

8.  Testing electrostatic complementarity in enzyme catalysis: hydrogen bonding in the ketosteroid isomerase oxyanion hole.

Authors:  Daniel A Kraut; Paul A Sigala; Brandon Pybus; Corey W Liu; Dagmar Ringe; Gregory A Petsko; Daniel Herschlag
Journal:  PLoS Biol       Date:  2006-03-28       Impact factor: 8.029

9.  Experimental and computational mutagenesis to investigate the positioning of a general base within an enzyme active site.

Authors:  Jason P Schwans; Philip Hanoian; Benjamin J Lengerich; Fanny Sunden; Ana Gonzalez; Yingssu Tsai; Sharon Hammes-Schiffer; Daniel Herschlag
Journal:  Biochemistry       Date:  2014-04-09       Impact factor: 3.162

  9 in total

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