Literature DB >> 10612817

Quality control in the discovery, reporting, and recording of genomic variation.

R G Cotton1, O Horaitis.   

Abstract

The usefulness of any database is dependent on the quality of its content. This is so for mutation databases and has been a continuing concern for those interested in such databases. This article discusses the critical points that determine the quality of the data, such as PCR errors, incomplete scanning, examination of the effect of the variation, and reporting and deposition of the mutations in a database. To illustrate the importance of quality control in mutation curation, nine articles reporting 34 novel phenylketonuria mutations were surveyed for the criteria believed to be important in describing mutations. Many articles were deficient in entries in several criteria, but there was still a high degree of certainty that the described mutations caused disease. Finally, strategies to eliminate errors and to enhance or indicate quality are discussed, including expression, the review process, checking deductions, and typing and encouraging compliance. Models for the future are also discussed. Copyright 2000 Wiley-Liss, Inc.

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Year:  2000        PMID: 10612817     DOI: 10.1002/(SICI)1098-1004(200001)15:1<16::AID-HUMU6>3.0.CO;2-S

Source DB:  PubMed          Journal:  Hum Mutat        ISSN: 1059-7794            Impact factor:   4.878


  4 in total

1.  The molecular basis of 3-methylcrotonylglycinuria, a disorder of leucine catabolism.

Authors:  M E Gallardo; L R Desviat; J M Rodríguez; J Esparza-Gordillo; C Pérez-Cerdá; B Pérez; P Rodríguez-Pombo; O Criado; R Sanz; D H Morton; K M Gibson; T P Le; A Ribes; S R de Córdoba; M Ugarte; M A Peñalva
Journal:  Am J Hum Genet       Date:  2001-01-17       Impact factor: 11.025

2.  Relationship between X-inactivation and clinical involvement in Fabry heterozygotes. Eleven novel mutations in the alpha-galactosidase A gene in the Czech and Slovak population.

Authors:  Robert Dobrovolny; Lenka Dvorakova; Jana Ledvinova; Sudheera Magage; Jan Bultas; Jean C Lubanda; Milan Elleder; Debora Karetova; Marketa Pavlikova; Martin Hrebicek
Journal:  J Mol Med (Berl)       Date:  2005-04-02       Impact factor: 4.599

3.  UASIS: Universal Automatic SNP Identification System.

Authors:  Danny C C Poo; Shaojiang Cai; James T L Mah
Journal:  BMC Genomics       Date:  2011-11-30       Impact factor: 3.969

4.  VariVis: a visualisation toolkit for variation databases.

Authors:  Timothy D Smith; Richard G H Cotton
Journal:  BMC Bioinformatics       Date:  2008-04-23       Impact factor: 3.169

  4 in total

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