Literature DB >> 10600691

Searching for drug targets in microbial genomes.

M Y Galperin1, E V Koonin.   

Abstract

Comparative analysis of the complete genome sequences of 10 bacterial pathogens available in the public databases offers the first insights into the drug discovery approaches of the near future. Genes that are conserved in different genomes often turn out to be essential, which makes them attractive targets for new broad-spectrum antibiotics. Subtractive genome analysis reveals the genes that are conserved in all or most of the pathogenic bacteria but not in eukaryotes; these are the most obvious candidates for drug targets. Species-specific genes, on the other hand, may offer the possibility to design drugs against a particular, narrow group of pathogens.

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Year:  1999        PMID: 10600691     DOI: 10.1016/s0958-1669(99)00035-x

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  44 in total

Review 1.  Sodium ion cycle in bacterial pathogens: evidence from cross-genome comparisons.

Authors:  C C Häse; N D Fedorova; M Y Galperin; P A Dibrov
Journal:  Microbiol Mol Biol Rev       Date:  2001-09       Impact factor: 11.056

Review 2.  Search and discovery strategies for biotechnology: the paradigm shift.

Authors:  A T Bull; A C Ward; M Goodfellow
Journal:  Microbiol Mol Biol Rev       Date:  2000-09       Impact factor: 11.056

3.  Identification of 113 conserved essential genes using a high-throughput gene disruption system in Streptococcus pneumoniae.

Authors:  Jane A Thanassi; Sandra L Hartman-Neumann; Thomas J Dougherty; Brian A Dougherty; Michael J Pucci
Journal:  Nucleic Acids Res       Date:  2002-07-15       Impact factor: 16.971

4.  Broad issues to consider for library involvement in bioinformatics.

Authors:  Renata C Geer
Journal:  J Med Libr Assoc       Date:  2006-07

5.  In silico quest for putative drug targets in Helicobacter pylori HPAG1: molecular modeling of candidate enzymes from lipopolysaccharide biosynthesis pathway.

Authors:  Munmun Sarkar; Lakshmi Maganti; Nanda Ghoshal; Chitra Dutta
Journal:  J Mol Model       Date:  2011-08-18       Impact factor: 1.810

6.  Initial proteome analysis of model microorganism Haemophilus influenzae strain Rd KW20.

Authors:  Eugene Kolker; Samuel Purvine; Michael Y Galperin; Serg Stolyar; David R Goodlett; Alexey I Nesvizhskii; Andrew Keller; Tao Xie; Jimmy K Eng; Eugene Yi; Leroy Hood; Alex F Picone; Tim Cherny; Brian C Tjaden; Andrew F Siegel; Thomas J Reilly; Kira S Makarova; Bernhard O Palsson; Arnold L Smith
Journal:  J Bacteriol       Date:  2003-08       Impact factor: 3.490

7.  Cell wall proteome analysis of Mycobacterium smegmatis strain MC2 155.

Authors:  Zhiguo He; Jeroen De Buck
Journal:  BMC Microbiol       Date:  2010-04-22       Impact factor: 3.605

8.  Evolution of bacterial phosphoglycerate mutases: non-homologous isofunctional enzymes undergoing gene losses, gains and lateral transfers.

Authors:  Jeremy M Foster; Paul J Davis; Sylvine Raverdy; Marion H Sibley; Elisabeth A Raleigh; Sanjay Kumar; Clotilde K S Carlow
Journal:  PLoS One       Date:  2010-10-26       Impact factor: 3.240

9.  From genetic footprinting to antimicrobial drug targets: examples in cofactor biosynthetic pathways.

Authors:  Svetlana Y Gerdes; Michael D Scholle; Mark D'Souza; Axel Bernal; Mark V Baev; Michael Farrell; Oleg V Kurnasov; Matthew D Daugherty; Faika Mseeh; Boris M Polanuyer; John W Campbell; Shubha Anantha; Konstantin Y Shatalin; Shamim A K Chowdhury; Michael Y Fonstein; Andrei L Osterman
Journal:  J Bacteriol       Date:  2002-08       Impact factor: 3.490

10.  An automatic method for identifying surface proteins in bacteria: SLEP.

Authors:  Emanuela Giombini; Massimiliano Orsini; Danilo Carrabino; Anna Tramontano
Journal:  BMC Bioinformatics       Date:  2010-01-20       Impact factor: 3.169

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