Literature DB >> 10600385

Crystal structure of Escherichia coli methionyl-tRNA synthetase highlights species-specific features.

Y Mechulam1, E Schmitt, L Maveyraud, C Zelwer, O Nureki, S Yokoyama, M Konno, S Blanquet.   

Abstract

The 3D structure of monomeric C-truncated Escherichia coli methionyl-tRNA synthetase, a class 1 aminoacyl-tRNA synthetase, has been solved at 2.0 A resolution. Remarkably, the polypeptide connecting the two halves of the Rossmann fold exposes two identical knuckles related by a 2-fold axis but with zinc in the distal knuckle only. Examination of available MetRS orthologs reveals four classes according to the number and zinc content of the putative knuckles. Extreme cases are exemplified by the MetRS of eucaryotic or archaeal origin, where two knuckles and two metal ions are expected, and by the mitochondrial enzymes, which are predicted to have one knuckle without metal ion. Copyright 1999 Academic Press.

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Year:  1999        PMID: 10600385     DOI: 10.1006/jmbi.1999.3339

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  43 in total

1.  The crystal structure of the ttCsaA protein: an export-related chaperone from Thermus thermophilus.

Authors:  S Kawaguchi; J Müller; D Linde; S Kuramitsu; T Shibata; Y Inoue; D G Vassylyev; S Yokoyama
Journal:  EMBO J       Date:  2001-02-01       Impact factor: 11.598

2.  A recurrent general RNA binding domain appended to plant methionyl-tRNA synthetase acts as a cis-acting cofactor for aminoacylation.

Authors:  M Kaminska; M Deniziak; P Kerjan; J Barciszewski; M Mirande
Journal:  EMBO J       Date:  2000-12-15       Impact factor: 11.598

3.  Mechanism of molecular interactions for tRNA(Val) recognition by valyl-tRNA synthetase.

Authors:  Shuya Fukai; Osamu Nureki; Shun-Ichi Sekine; Atsushi Shimada; Dmitry G Vassylyev; Shigeyuki Yokoyama
Journal:  RNA       Date:  2003-01       Impact factor: 4.942

4.  Two distinct domains of the beta subunit of Aquifex aeolicus leucyl-tRNA synthetase are involved in tRNA binding as revealed by a three-hybrid selection.

Authors:  Yong-Gang Zheng; Hui Wei; Chen Ling; Franck Martin; Gilbert Eriani; En-Duo Wang
Journal:  Nucleic Acids Res       Date:  2004-06-18       Impact factor: 16.971

5.  Selectivity and specificity of substrate binding in methionyl-tRNA synthetase.

Authors:  Deepshikha Datta; Nagarajan Vaidehi; Deqiang Zhang; William A Goddard
Journal:  Protein Sci       Date:  2004-10       Impact factor: 6.725

6.  Comparison of histidine recognition in human and trypanosomatid histidyl-tRNA synthetases.

Authors:  Cho Yeow Koh; Allan B Wetzel; Will J de van der Schueren; Wim G J Hol
Journal:  Biochimie       Date:  2014-08-20       Impact factor: 4.079

Review 7.  Initiation of protein synthesis in bacteria.

Authors:  Brian Søgaard Laursen; Hans Peter Sørensen; Kim Kusk Mortensen; Hans Uffe Sperling-Petersen
Journal:  Microbiol Mol Biol Rev       Date:  2005-03       Impact factor: 11.056

8.  A study of communication pathways in methionyl- tRNA synthetase by molecular dynamics simulations and structure network analysis.

Authors:  Amit Ghosh; Saraswathi Vishveshwara
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-26       Impact factor: 11.205

9.  Biallelic Mutations of Methionyl-tRNA Synthetase Cause a Specific Type of Pulmonary Alveolar Proteinosis Prevalent on Réunion Island.

Authors:  Alice Hadchouel; Thomas Wieland; Matthias Griese; Enrico Baruffini; Bettina Lorenz-Depiereux; Laurent Enaud; Elisabeth Graf; Jean Christophe Dubus; Sonia Halioui-Louhaichi; Aurore Coulomb; Christophe Delacourt; Gertrud Eckstein; Ralf Zarbock; Thomas Schwarzmayr; François Cartault; Thomas Meitinger; Tiziana Lodi; Jacques de Blic; Tim M Strom
Journal:  Am J Hum Genet       Date:  2015-04-23       Impact factor: 11.025

10.  Distinct states of methionyl-tRNA synthetase indicate inhibitor binding by conformational selection.

Authors:  Cho Yeow Koh; Jessica E Kim; Sayaka Shibata; Ranae M Ranade; Mingyan Yu; Jiyun Liu; J Robert Gillespie; Frederick S Buckner; Christophe L M J Verlinde; Erkang Fan; Wim G J Hol
Journal:  Structure       Date:  2012-08-16       Impact factor: 5.006

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