Literature DB >> 10598092

Design and evaluation of a primer pair that detects both Norwalk- and Sapporo-like caliciviruses by RT-PCR.

X Jiang1, P W Huang, W M Zhong, T Farkas, D W Cubitt, D O Matson.   

Abstract

A primer pair (p289/290) based on the RNA polymerase sequence of 25 prototype and currently circulating strains of human caliciviruses (HuCVs) was designed for the detection of both Norwalk-like caliciviruses (NLVs) and Sapporo-like caliciviruses (SLVs) by reverse transcription-polymerase chain reaction (RT-PCR). This primer pair produces RT-PCR products of 319 bp for NLVs and 331 bp for SLVs. The usefulness of this primer pair was shown by its detection of prototype NLVs (Norwalk, Snow Mountain, Hawaii and Mexico viruses) and SLVs (Sapporo/82, Hou/86, Hou/90 and Lon/92) and currently circulating strains of NLVs and SLVs in children and adults. This primer pair also detected more viruses in either NLV or SLV genera than previously designed primers. This primer pair is useful for broad detection of HuCVs for clinical and epidemiologic studies as well as for environmental monitoring.

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Year:  1999        PMID: 10598092     DOI: 10.1016/s0166-0934(99)00114-7

Source DB:  PubMed          Journal:  J Virol Methods        ISSN: 0166-0934            Impact factor:   2.014


  151 in total

1.  Broadly reactive and highly sensitive assay for Norwalk-like viruses based on real-time quantitative reverse transcription-PCR.

Authors:  Tsutomu Kageyama; Shigeyuki Kojima; Michiyo Shinohara; Kazue Uchida; Shuetsu Fukushi; Fuminori B Hoshino; Naokazu Takeda; Kazuhiko Katayama
Journal:  J Clin Microbiol       Date:  2003-04       Impact factor: 5.948

2.  International collaborative study to compare reverse transcriptase PCR assays for detection and genotyping of noroviruses.

Authors:  Jan Vinjé; Harry Vennema; Leena Maunula; Carl-Henrik von Bonsdorff; Marina Hoehne; Eckart Schreier; Alison Richards; Jon Green; David Brown; Suzanne S Beard; Stephan S Monroe; Erwin de Bruin; Lennart Svensson; Marion P G Koopmans
Journal:  J Clin Microbiol       Date:  2003-04       Impact factor: 5.948

3.  Primer pair p289-p290, designed to detect both noroviruses and sapoviruses by reverse transcription-PCR, also detects rotaviruses by cross-reactivity.

Authors:  Juan E Ludert; Ana C Alcalá; Ferdinando Liprandi
Journal:  J Clin Microbiol       Date:  2004-02       Impact factor: 5.948

4.  Evaluation and comparison of two commercial enzyme-linked immunosorbent assay kits for detection of antigenically diverse human noroviruses in stool samples.

Authors:  Jonathan A Burton-MacLeod; Erin M Kane; Rachel S Beard; Leslie A Hadley; Roger I Glass; Tamie Ando
Journal:  J Clin Microbiol       Date:  2004-06       Impact factor: 5.948

5.  Development and evaluation of a new commercial test allowing the simultaneous detection of noroviruses and sapoviruses by reverse transcription-PCR and microplate hybridization.

Authors:  F Bon; H Giraudon; C Sancey; C Barranger; M Joannes; P Pothier; E Kohli
Journal:  J Clin Microbiol       Date:  2004-05       Impact factor: 5.948

6.  Detection of enteric viruses in shellfish from the Norwegian coast.

Authors:  M Myrmel; E M M Berg; E Rimstad; B Grinde
Journal:  Appl Environ Microbiol       Date:  2004-05       Impact factor: 4.792

7.  Characterization of an enteropathogenic bovine calicivirus representing a potentially new calicivirus genus.

Authors:  J R Smiley; K O Chang; J Hayes; J Vinjé; L J Saif
Journal:  J Virol       Date:  2002-10       Impact factor: 5.103

8.  Age distribution of porcine sapovirus asymptomatic infection and molecular evidence of genogroups GIII and GIX? circulation in distinct Brazilian pig production systems.

Authors:  Cecília Souza Valente; Alice Fernandes Alfieri; Aline Fernandes Barry; Raquel Arruda Leme; Elis Lorenzetti; Amauri Alcindo Alfieri
Journal:  Trop Anim Health Prod       Date:  2015-09-18       Impact factor: 1.559

9.  Pediatric norovirus diarrhea in Nicaragua.

Authors:  Filemon Bucardo; Johan Nordgren; Beatrice Carlsson; Margarita Paniagua; Per-Eric Lindgren; Felix Espinoza; Lennart Svensson
Journal:  J Clin Microbiol       Date:  2008-06-18       Impact factor: 5.948

10.  Prevalence and molecular characterization of porcine enteric caliciviruses and first detection of porcine kobuviruses in US swine.

Authors:  Zufan Sisay; Qiuhong Wang; Tomoichiro Oka; Linda Saif
Journal:  Arch Virol       Date:  2013-03-02       Impact factor: 2.574

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