Literature DB >> 10592218

The European large subunit ribosomal RNA database.

P De Rijk1, J Wuyts, Y Van de Peer, T Winkelmans, R De Wachter.   

Abstract

The European Large Subunit (LSU) Ribosomal RNA (rRNA) database is accessible via the rRNA WWW Server at URL http://rrna.uia.ac.be/lsu/. It is a curated database that compiles complete or nearly complete LSU rRNA sequences in aligned form, and also incorporates secondary structure information for each sequence. Taxonomic information, literature references and other information about the sequences are also available, and can be searched via the WWW interface.

Mesh：

Substances：

Year:  2000        PMID： 10592218      PMCID： PMC102430          DOI： 10.1093/nar/28.1.177

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  9 in total

1.  DCSE, an interactive tool for sequence alignment and secondary structure research.

Authors:  P De Rijk; R De Wachter
Journal:  Comput Appl Biosci       Date:  1993-12

2.  Database on the structure of large subunit ribosomal RNA.

Authors:  P De Rijk; E Robbrecht; S de Hoog; A Caers; Y Van de Peer; R De Wachter
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

3.  Fourteen internal transcribed spacers in the circular ribosomal DNA of Euglena gracilis.

Authors:  M N Schnare; J R Cook; M W Gray
Journal:  J Mol Biol       Date:  1990-09-05       Impact factor: 5.469

Review 4.  Structure and function of ribosomal RNA.

Authors:  R Brimacombe; W Stiege
Journal:  Biochem J       Date:  1985-07-01       Impact factor: 3.857

5.  TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment.

Authors:  Y Van de Peer; R De Wachter
Journal:  Comput Appl Biosci       Date:  1994-09

6.  A compilation of large subunit (23S and 23S-like) ribosomal RNA structures: 1993.

Authors:  R R Gutell; M W Gray; M N Schnare
Journal:  Nucleic Acids Res       Date:  1993-07-01       Impact factor: 16.971

7.  Secondary structure model for 23S ribosomal RNA.

Authors:  H F Noller; J Kop; V Wheaton; J Brosius; R R Gutell; A M Kopylov; F Dohme; W Herr; D A Stahl; R Gupta; C R Waese
Journal:  Nucleic Acids Res       Date:  1981-11-25       Impact factor: 16.971

8.  Evolutionary relationships amongst archaebacteria. A comparative study of 23 S ribosomal RNAs of a sulphur-dependent extreme thermophile, an extreme halophile and a thermophilic methanogen.

Authors:  H Leffers; J Kjems; L Ostergaard; N Larsen; R A Garrett
Journal:  J Mol Biol       Date:  1987-05-05       Impact factor: 5.469

9.  Comparative structure and genomic organization of the discontinuous mitochondrial ribosomal RNA genes of Chlamydomonas eugametos and Chlamydomonas reinhardtii.

Authors:  E M Denovan-Wright; R W Lee
Journal:  J Mol Biol       Date:  1994-08-12       Impact factor: 5.469
  9 in total
  8 in total

1.  Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA.

Authors:  J Wuyts; P De Rijk; Y Van de Peer; G Pison; P Rousseeuw; R De Wachter
Journal:  Nucleic Acids Res       Date:  2000-12-01       Impact factor: 16.971

2.  Complete mitochondrial DNA genome sequences show that modern birds are not descended from transitional shorebirds.

Authors:  Tara Paton; Oliver Haddrath; Allan J Baker
Journal:  Proc Biol Sci       Date:  2002-04-22       Impact factor: 5.349

3.  Structural rRNA characters support monophyly of raptorial limbs and paraphyly of limb specialization in water fleas.

Authors:  Timothy D Swain; Derek J Taylor
Journal:  Proc Biol Sci       Date:  2003-05-07       Impact factor: 5.349

4.  Phylogenetic analyses under secondary structure-specific substitution models outperform traditional approaches: case studies with diploblast LSU.

Authors:  Dirk Erpenbeck; Scott A Nichols; Oliver Voigt; Martin Dohrmann; Bernard M Degnan; John N A Hooper; Gert Wörheide
Journal:  J Mol Evol       Date:  2007-04-24       Impact factor: 2.395

5.  The right angle (RA) motif: a prevalent ribosomal RNA structural pattern found in group I introns.

Authors:  Wade W Grabow; Zhuoyun Zhuang; Zoe N Swank; Joan-Emma Shea; Luc Jaeger
Journal:  J Mol Biol       Date:  2012-09-18       Impact factor: 5.469

6.  Potential pitfalls of modelling ribosomal RNA data in phylogenetic tree reconstruction: evidence from case studies in the Metazoa.

Authors:  Harald O Letsch; Karl M Kjer
Journal:  BMC Evol Biol       Date:  2011-05-27       Impact factor: 3.260

7.  Characteristics of the nuclear (18S, 5.8S, 28S and 5S) and mitochondrial (12S and 16S) rRNA genes of Apis mellifera (Insecta: Hymenoptera): structure, organization, and retrotransposable elements.

Authors:  J J Gillespie; J S Johnston; J J Cannone; R R Gutell
Journal:  Insect Mol Biol       Date:  2006-10       Impact factor: 3.585

8.  Secondary structure and domain architecture of the 23S and 5S rRNAs.

Authors:  Anton S Petrov; Chad R Bernier; Eli Hershkovits; Yuzhen Xue; Chris C Waterbury; Chiaolong Hsiao; Victor G Stepanov; Eric A Gaucher; Martha A Grover; Stephen C Harvey; Nicholas V Hud; Roger M Wartell; George E Fox; Loren Dean Williams
Journal:  Nucleic Acids Res       Date:  2013-06-14       Impact factor: 16.971
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.