Literature DB >> 10592210

PLMItRNA, a database for tRNAs and tRNA genes in plant mitochondria: enlargement and updating.

V Volpetti1, R Gallerani, C De Benedetto, S Liuni, F Licciulli, L R Ceci.   

Abstract

The current version of PLMItRNA has been realized to constitute a database for tRNA molecules and genes identified in the mitochondria of all green plants ( Viridiplantae ). It is the enlargement of a previous database originally restricted to seed plants [Ceci,L.R., Volpicella,M., Liuni,S., Volpetti,V., Licciulli,F. and Gallerani,R. (1999) Nucleic Acids Res., 27, 156-157]. PLMItRNA reports information and multialignments on 254 genes and 16 tRNA molecules detected in 25 higher plants (one bryophyta and 24 vascular plants) and seven green algae. PLMItRNA is accessible via the WWW at http://bio-WWW.ba.cnr.it:8000/srs6/

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Year:  2000        PMID： 10592210      PMCID： PMC102413          DOI： 10.1093/nar/28.1.159

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  19 in total

1.  APhaseolus vulgaris mitochondrial tRNA(Leu) is identical to its cytoplasmic counterpart: sequencing andin vivo transcription of the gene corresponding to the cytoplasmic tRNA(Leu.).

Authors:  G A Green; L Marechal; J H Weil; P Guillemaut
Journal:  Plant Mol Biol       Date:  1987-01       Impact factor: 4.076

2.  PLMItRNA, a database for higher plant mitochondrial tRNAs and tRNA genes.

Authors:  L R Ceci; M Volpicella; S Liuni; V Volpetti; F Licciulli; R Gallerani
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

3.  The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides.

Authors:  M Unseld; J R Marienfeld; P Brandt; A Brennicke
Journal:  Nat Genet       Date:  1997-01       Impact factor: 38.330

4.  Improved tools for biological sequence comparison.

Authors:  W R Pearson; D J Lipman
Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

5.  Nucleotide sequence of bean mitochondrial tRNALeu4 and of its cytoplasmic counterpart. Re-examination of the modified nucleotide present at position 12 in bean mitochondrial and cytoplasmic tRNALeu1 sequences.

Authors:  L Maréchal-Drouard; P Guillemaut
Journal:  Nucleic Acids Res       Date:  1988-12-23       Impact factor: 16.971

6.  ACNUC--a portable retrieval system for nucleic acid sequence databases: logical and physical designs and usage.

Authors:  M Gouy; C Gautier; M Attimonelli; C Lanave; G di Paola
Journal:  Comput Appl Biosci       Date:  1985-09

7.  A nuclear-encoded potato (Solanum tuberosum) mitochondrial tRNA(Leu) and its cytosolic counterpart have identical nucleotide sequences.

Authors:  L Maréchal-Drouard; M Neuburger; P Guillemaut; R Douce; J H Weil; A Dietrich
Journal:  FEBS Lett       Date:  1990-03-26       Impact factor: 4.124

8.  Occurrence of nuclear-encoded tRNAIle in mitochondria of the liverwort Marchantia polymorpha.

Authors:  K Akashi; K Sakurai; J Hirayama; H Fukuzawa; K Ohyama
Journal:  Curr Genet       Date:  1996-07-31       Impact factor: 3.886

9.  Structure and organization of the mitochondrial genome of the unicellular red alga Cyanidioschyzon merolae deduced from the complete nucleotide sequence.

Authors:  N Ohta; N Sato; T Kuroiwa
Journal:  Nucleic Acids Res       Date:  1998-11-15       Impact factor: 16.971

10.  The mitochondrial genome of Chlorogonium elongatum inferred from the complete sequence.

Authors:  J Kroymann; K Zetsche
Journal:  J Mol Evol       Date:  1998-10       Impact factor: 2.395
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  1 in total

1.  PLMItRNA, a database for mitochondrial tRNA genes and tRNAs in photosynthetic eukaryotes.

Authors:  F Damiano; R Gallerani; S Liuni; F Licciulli; L R Ceci
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971
  1 in total

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