Literature DB >> 10592204

Axeldb: a Xenopus laevis database focusing on gene expression.

N Pollet1, H A Schmidt, V Gawantka, M Vingron, C Niehrs.   

Abstract

Axeldb is a database storing and integrating gene expression patterns and DNA sequences identified in a large-scale in situ hybridization study in Xenopus laevis embryos. The data are organised in a format appropriate for comprehensive analysis, and enable comparison of images of expression pattern for any given set of genes. Information on literature, cDNA clones and their availability, nucleotide sequences, expression pattern and accompanying pictures are available. Current developments are aimed toward the interconnection with other databases and the integration of data from the literature. Axeldb is implemented using an ACEDB database system, and available through the web at http://www.dkfz-heidelberg.de/abt0135/axeldb.htm

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Year:  2000        PMID: 10592204      PMCID: PMC102398          DOI: 10.1093/nar/28.1.139

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  6 in total

1.  Gene expression screening in Xenopus identifies molecular pathways, predicts gene function and provides a global view of embryonic patterning.

Authors:  V Gawantka; N Pollet; H Delius; M Vingron; R Pfister; R Nitsch; C Blumenstock; C Niehrs
Journal:  Mech Dev       Date:  1998-10       Impact factor: 1.882

Review 2.  Gene-expression screens in vertebrate embryos: more than meets the eye.

Authors:  C Niehrs
Journal:  Genes Funct       Date:  1997-11

3.  Scriptable access to the Caenorhabditis elegans genome sequence and other ACEDB databases.

Authors:  L D Stein; J Thierry-Mieg
Journal:  Genome Res       Date:  1998-12       Impact factor: 9.043

4.  FlyView, a Drosophila image database, and other Drosophila databases

Authors: 
Journal:  Semin Cell Dev Biol       Date:  1997-10       Impact factor: 7.727

5.  Gene expression and development databases for C. elegans

Authors: 
Journal:  Semin Cell Dev Biol       Date:  1997-10       Impact factor: 7.727

6.  GXD: a gene expression database for the laboratory mouse. The Gene Expression Database Group.

Authors:  M Ringwald; M E Mangan; J T Eppig; J A Kadin; J E Richardson
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

  6 in total
  11 in total

1.  Reliability of gene expression ratios for cDNA microarrays in multiconditional experiments with a reference design.

Authors:  Rainer König; Danila Baldessari; Nicolas Pollet; Christof Niehrs; Roland Eils
Journal:  Nucleic Acids Res       Date:  2004-02-13       Impact factor: 16.971

2.  On-line resources for Xenopus.

Authors:  Jeff Bowes
Journal:  Methods Mol Biol       Date:  2012

3.  DGEM--a microarray gene expression database for primary human disease tissues.

Authors:  Yuni Xia; Andrew Campen; Dan Rigsby; Ying Guo; Xingdong Feng; Eric W Su; Mathew Palakal; Shuyu Li
Journal:  Mol Diagn Ther       Date:  2007       Impact factor: 4.074

4.  MEPD: a Medaka gene expression pattern database.

Authors:  Thorsten Henrich; Mirana Ramialison; Rebecca Quiring; Beate Wittbrodt; Makoto Furutani-Seiki; Joachim Wittbrodt; Hisato Kondoh
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

5.  Genetic screens for mutations affecting development of Xenopus tropicalis.

Authors:  Tadahiro Goda; Anita Abu-Daya; Samantha Carruthers; Matthew D Clark; Derek L Stemple; Lyle B Zimmerman
Journal:  PLoS Genet       Date:  2006-06-09       Impact factor: 5.917

Review 6.  An amphibian with ambition: a new role for Xenopus in the 21st century.

Authors:  C W Beck; J M Slack
Journal:  Genome Biol       Date:  2001-09-19       Impact factor: 13.583

7.  Xenbase: gene expression and improved integration.

Authors:  Jeff B Bowes; Kevin A Snyder; Erik Segerdell; Chris J Jarabek; Kenan Azam; Aaron M Zorn; Peter D Vize
Journal:  Nucleic Acids Res       Date:  2009-11-01       Impact factor: 16.971

8.  An ontology for Xenopus anatomy and development.

Authors:  Erik Segerdell; Jeff B Bowes; Nicolas Pollet; Peter D Vize
Journal:  BMC Dev Biol       Date:  2008-09-25       Impact factor: 1.978

9.  Exploring nervous system transcriptomes during embryogenesis and metamorphosis in Xenopus tropicalis using EST analysis.

Authors:  Ana C Fierro; Raphaël Thuret; Laurent Coen; Muriel Perron; Barbara A Demeneix; Maurice Wegnez; Gabor Gyapay; Jean Weissenbach; Patrick Wincker; André Mazabraud; Nicolas Pollet
Journal:  BMC Genomics       Date:  2007-05-16       Impact factor: 3.969

10.  Xenbase: a Xenopus biology and genomics resource.

Authors:  Jeff B Bowes; Kevin A Snyder; Erik Segerdell; Ross Gibb; Chris Jarabek; Etienne Noumen; Nicolas Pollet; Peter D Vize
Journal:  Nucleic Acids Res       Date:  2007-11-04       Impact factor: 16.971

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