Literature DB >> 10592194

UK CropNet: a collection of databases and bioinformatics resources for crop plant genomics.

J Dicks1, M Anderson, L Cardle, S Cartinhour, M Couchman, G Davenport, J Dickson, M Gale, D Marshall, S May, H McWilliam, A O'Malia, H Ougham, M Trick, S Walsh, R Waugh.   

Abstract

The UK Crop Plant Bioinformatics Network (UK CropNet) was established in 1996 in order to harness the extensive work in genome mapping in crop plants in the UK. Since this date we have published five databases from our central UK CropNet WWW site (http://synteny.nott.ac.uk/) with a further three to follow shortly. Our resource facilitates the identification and manipulation of agronomically important genes by laying a foundation for comparative analysis among crop plants and model species. In addition, we have developed a number of software tools that facilitate the visualisation and analysis of our data. Many of our tools are made freely available for use with both crop plant data and with data from other species.

Mesh:

Year:  2000        PMID: 10592194      PMCID: PMC102397          DOI: 10.1093/nar/28.1.104

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  7 in total

1.  Mendel-GFDb and Mendel-ESTS: databases of plant gene families and ESTs annotated with gene family numbers and gene family names.

Authors:  D Lonsdale; M Crowe; B Arnold; B C Arnold
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

Review 2.  Surviving in a sea of data: a survey of plant genome data resources and issues in building data management systems.

Authors:  Leonore Reiser; Lukas A Mueller; Seung Yon Rhee
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

3.  TropGENE-DB, a multi-tropical crop information system.

Authors:  Manuel Ruiz; Mathieu Rouard; Louis Marie Raboin; Marc Lartaud; Pierre Lagoda; Brigitte Courtois
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

4.  GénoPlante-Info (GPI): a collection of databases and bioinformatics resources for plant genomics.

Authors:  Delphine Samson; Fabrice Legeai; Emmanuelle Karsenty; Sébastien Reboux; Jean-Baptiste Veyrieras; Jeremy Just; Emmanuel Barillot
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

5.  Secondary product glycosyltransferases in seeds of Brassica napus.

Authors:  Juliane Mittasch; Dieter Strack; Carsten Milkowski
Journal:  Planta       Date:  2006-08-15       Impact factor: 4.116

6.  SPODOBASE: an EST database for the lepidopteran crop pest Spodoptera.

Authors:  Vincent Nègre; Thierry Hôtelier; Anne-Nathalie Volkoff; Sylvie Gimenez; François Cousserans; Kazuei Mita; Xavier Sabau; Janick Rocher; Miguel López-Ferber; Emmanuelle d'Alençon; Pascaline Audant; Cécile Sabourault; Vincent Bidegainberry; Frédérique Hilliou; Philippe Fournier
Journal:  BMC Bioinformatics       Date:  2006-06-23       Impact factor: 3.169

7.  Computational tools for Brassica-Arabidopsis comparative genomics.

Authors:  Paul Beckett; Ian Bancroft; Martin Trick
Journal:  Comp Funct Genomics       Date:  2005
  7 in total

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