Literature DB >> 10592184

CyanoBase, the genome database for Synechocystis sp. strain PCC6803: status for the year 2000.

Y Nakamura1, T Kaneko, S Tabata.   

Abstract

CyanoBase provides an online resource for access to data on genomic information about the cyanobacterium Synechocystis sp. strain PCC6803. The database contains annotations for each protein-coding gene deduced from the entire nucleotide sequence of the genome, gene classification lists, and keyword and similarity search engines. Core portions of CyanoBase consist of annotations for each of the 3168 protein genes deduced from the entire nucleotide sequence of this genome. The contents of each gene were improved by updating with the results of similarity searches and by introducing references for analysis in bioinformatics. The database now contains repository facilities that store and provide experimental information, in addition to providing proposals for the function of each gene. This information should help to avoid unnecessary, overlapping experiments and should assist communication between scientists who wish to elucidate the function of putative genes on the cyanobacteria genome. The current URL of CyanoBase is http://www.kazusa.or.jp:8080/cyano/

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Year:  2000        PMID: 10592184      PMCID: PMC102459          DOI: 10.1093/nar/28.1.72

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  2 in total

1.  Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions.

Authors:  T Kaneko; S Sato; H Kotani; A Tanaka; E Asamizu; Y Nakamura; N Miyajima; M Hirosawa; M Sugiura; S Sasamoto; T Kimura; T Hosouchi; A Matsuno; A Muraki; N Nakazaki; K Naruo; S Okumura; S Shimpo; C Takeuchi; T Wada; A Watanabe; M Yamada; M Yasuda; S Tabata
Journal:  DNA Res       Date:  1996-06-30       Impact factor: 4.458

2.  Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64% to 92% of the genome.

Authors:  T Kaneko; A Tanaka; S Sato; H Kotani; T Sazuka; N Miyajima; M Sugiura; S Tabata
Journal:  DNA Res       Date:  1995-08-31       Impact factor: 4.458

  2 in total
  21 in total

1.  Genetic engineering of phytochrome biosynthesis in bacteria.

Authors:  G A Gambetta; J C Lagarias
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-11       Impact factor: 11.205

2.  The cyanobacterial genome core and the origin of photosynthesis.

Authors:  Armen Y Mulkidjanian; Eugene V Koonin; Kira S Makarova; Sergey L Mekhedov; Alexander Sorokin; Yuri I Wolf; Alexis Dufresne; Frédéric Partensky; Henry Burd; Denis Kaznadzey; Robert Haselkorn; Michael Y Galperin
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-21       Impact factor: 11.205

3.  Functional proteomic discovery of Slr0110 as a central regulator of carbohydrate metabolism in Synechocystis species PCC6803.

Authors:  Liyan Gao; Chunting Shen; Libing Liao; Xiahe Huang; Kehui Liu; Wei Wang; Lihai Guo; Wenhai Jin; Fang Huang; Wu Xu; Yingchun Wang
Journal:  Mol Cell Proteomics       Date:  2013-10-29       Impact factor: 5.911

Review 4.  Toward the complete proteome of Synechocystis sp. PCC 6803.

Authors:  Liyan Gao; Jinlong Wang; Haitao Ge; Longfa Fang; Yuanya Zhang; Xiahe Huang; Yingchun Wang
Journal:  Photosynth Res       Date:  2015-04-11       Impact factor: 3.573

Review 5.  Biodesalination: a case study for applications of photosynthetic bacteria in water treatment.

Authors:  Jaime M Amezaga; Anna Amtmann; Catherine A Biggs; Tom Bond; Catherine J Gandy; Annegret Honsbein; Esther Karunakaran; Linda Lawton; Mary Ann Madsen; Konstantinos Minas; Michael R Templeton
Journal:  Plant Physiol       Date:  2014-03-07       Impact factor: 8.340

6.  Biosynthesis of a fluorescent cyanobacterial C-phycocyanin holo-alpha subunit in a heterologous host.

Authors:  A J Tooley; Y A Cai; A N Glazer
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-11       Impact factor: 11.205

7.  Biosynthesis of the cyanobacterial light-harvesting polypeptide phycoerythrocyanin holo-alpha subunit in a heterologous host.

Authors:  Aaron J Tooley; Alexander N Glazer
Journal:  J Bacteriol       Date:  2002-09       Impact factor: 3.490

8.  CyanoClust: comparative genome resources of cyanobacteria and plastids.

Authors:  Naobumi V Sasaki; Naoki Sato
Journal:  Database (Oxford)       Date:  2010-01-08       Impact factor: 3.451

9.  CyanoBase: the cyanobacteria genome database update 2010.

Authors:  Mitsuteru Nakao; Shinobu Okamoto; Mitsuyo Kohara; Tsunakazu Fujishiro; Takatomo Fujisawa; Shusei Sato; Satoshi Tabata; Takakazu Kaneko; Yasukazu Nakamura
Journal:  Nucleic Acids Res       Date:  2009-10-30       Impact factor: 16.971

10.  A large-scale protein protein interaction analysis in Synechocystis sp. PCC6803.

Authors:  Shusei Sato; Yoshikazu Shimoda; Akiko Muraki; Mitsuyo Kohara; Yasukazu Nakamura; Satoshi Tabata
Journal:  DNA Res       Date:  2007-11-13       Impact factor: 4.458

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