Literature DB >> 10591109

Diversity of conformational states and changes within the EF-hand protein superfamily.

K L Yap1, J B Ames, M B Swindells, M Ikura.   

Abstract

The EF-hand motif, which assumes a helix-loop-helix structure normally responsible for Ca2+ binding, is found in a large number of functionally diverse Ca2+ binding proteins collectively known as the EF-hand protein superfamily. In many superfamily members, Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. In calmodulin and troponin C, this is described as a change from the closed conformational state in the absence of Ca2+ to the open conformational state in its presence. It is now clear from structures of other EF-hand proteins that this "closed-to-open" conformational transition is not the sole model for EF-hand protein structural response to Ca2+. More complex modes of conformational change are observed in EF-hand proteins that interact with a covalently attached acyl group (e.g., recoverin) and in those that dimerize (e.g., S100B, calpain). In fact, EF-hand proteins display a multitude of unique conformational states, together constituting a conformational continuum. Using a quantitative 3D approach termed vector geometry mapping (VGM), we discuss this tertiary structural diversity of EF-hand proteins and its correlation with target recognition.

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Year:  1999        PMID: 10591109     DOI: 10.1002/(sici)1097-0134(19991115)37:3<499::aid-prot17>3.0.co;2-y

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  91 in total

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5.  Observation of microsecond time-scale protein dynamics in the presence of Ln3+ ions: application to the N-terminal domain of cardiac troponin C.

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Authors:  Deepa V Venkitaramani; D Bruce Fulton; Amy H Andreotti; Kristen M Johansen; Jørgen Johansen
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8.  Prediction of calcium-binding sites by combining loop-modeling with machine learning.

Authors:  Tianyun Liu; Russ B Altman
Journal:  BMC Struct Biol       Date:  2009-12-11

9.  Neuronal calcium sensor-1 (Ncs1p) is up-regulated by calcineurin to promote Ca2+ tolerance in fission yeast.

Authors:  Nobuko Hamasaki-Katagiri; James B Ames
Journal:  J Biol Chem       Date:  2009-12-14       Impact factor: 5.157

10.  A united residue force-field for calcium-protein interactions.

Authors:  Mey Khalili; Jeffrey A Saunders; Adam Liwo; Stanislaw Ołdziej; Harold A Scheraga
Journal:  Protein Sci       Date:  2004-10       Impact factor: 6.725

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