Literature DB >> 10572189

High-throughput plasmid DNA purification for 3 cents per sample.

M A Marra1, T A Kucaba, L W Hillier, R H Waterston.   

Abstract

To accommodate the increasingly rapid rates of DNA sequencing we have developed and implemented an inexpensive, expeditious method for the purification of double-stranded plasmid DNA clones. The robust nature, high throughput, low degree of technical difficulty and extremely low cost have made it the plasmid DNA preparation method of choice in both our expressed sequence tag (EST) and genome sequencing projects. Here we report the details of the method and describe its application in the generation of more than 700 000 ESTs at a rate exceeding 16 000 per week.

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Year:  1999        PMID: 10572189      PMCID: PMC148760          DOI: 10.1093/nar/27.24.e37

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  14 in total

1.  High-throughput plasmid purification for capillary sequencing.

Authors:  C J Elkin; P M Richardson; H M Fourcade; N M Hammon; M J Pollard; P F Predki; T Glavina; T L Hawkins
Journal:  Genome Res       Date:  2001-07       Impact factor: 9.043

2.  Gene discovery in the apicomplexa as revealed by EST sequencing and assembly of a comparative gene database.

Authors:  Li Li; Brian P Brunk; Jessica C Kissinger; Deana Pape; Keliang Tang; Robert H Cole; John Martin; Todd Wylie; Mike Dante; Steven J Fogarty; Daniel K Howe; Paul Liberator; Carmen Diaz; Jennifer Anderson; Michael White; Maria E Jerome; Emily A Johnson; Jay A Radke; Christian J Stoeckert; Robert H Waterston; Sandra W Clifton; David S Roos; L David Sibley
Journal:  Genome Res       Date:  2003-03       Impact factor: 9.043

3.  Fosmid-based physical mapping of the Histoplasma capsulatum genome.

Authors:  Vincent Magrini; Wesley C Warren; John Wallis; William E Goldman; Jian Xu; Elaine R Mardis; John D McPherson
Journal:  Genome Res       Date:  2004-08       Impact factor: 9.043

4.  Gene expression profiling of in Moniezia expansa at different developmental proglottids using cDNA microarray.

Authors:  Xinwen Bo; Wenjuan Zhao; Hui Zhang; Lichao Kang; Xinhua Wang
Journal:  Mol Biol Rep       Date:  2011-10-16       Impact factor: 2.316

5.  Glass bead purification of plasmid template DNA for high throughput sequencing of mammalian genomes.

Authors:  Debra A Dederich; Geoffrey Okwuonu; Toni Garner; Amanda Denn; Angelica Sutton; Michael Escotto; Ashley Martindale; Oliver Delgado; Donna M Muzny; Richard A Gibbs; Michael L Metzker
Journal:  Nucleic Acids Res       Date:  2002-04-01       Impact factor: 16.971

6.  Transcriptome analysis of Aspergillus nidulans exposed to camptothecin-induced DNA damage.

Authors:  Iran Malavazi; Marcela Savoldi; Sônia Marli Zingaretti Di Mauro; Carlos Frederico Martins Menck; Steven D Harris; Maria Helena de Souza Goldman; Gustavo Henrique Goldman
Journal:  Eukaryot Cell       Date:  2006-10

7.  The complete DNA sequence of the mitochondrial genome of the dermatophyte fungus Epidermophyton floccosum.

Authors:  José Humberto M Tambor; Raquel F Guedes; Marina P Nobrega; Francisco G Nobrega
Journal:  Curr Genet       Date:  2006-02-01       Impact factor: 3.886

8.  Expressed sequence tag analysis of the human pathogen Paracoccidioides brasiliensis yeast phase: identification of putative homologues of Candida albicans virulence and pathogenicity genes.

Authors:  Gustavo H Goldman; Everaldo dos Reis Marques; Diógenes Custódio Duarte Ribeiro; Luciano Angelo de Souza Bernardes; Andréa Carla Quiapin; Patrícia Marostica Vitorelli; Marcela Savoldi; Camile P Semighini; Regina C de Oliveira; Luiz R Nunes; Luiz R Travassos; Rosana Puccia; Wagner L Batista; Leslie Ecker Ferreira; Júlio C Moreira; Ana Paula Bogossian; Fredj Tekaia; Marina Pasetto Nobrega; Francisco G Nobrega; Maria Helena S Goldman
Journal:  Eukaryot Cell       Date:  2003-02

9.  1274 full-open reading frames of transcripts expressed in the developing mouse nervous system.

Authors:  Maria F Bonaldo; Thomas B Bair; Todd E Scheetz; Einat Snir; Ike Akabogu; Jennifer L Bair; Brian Berger; Keith Crouch; Aja Davis; Mari E Eyestone; Catherine Keppel; Tamara A Kucaba; Mark Lebeck; Jenny L Lin; Anna I R de Melo; Joshua Rehmann; Rebecca S Reiter; Kelly Schaefer; Christina Smith; Dylan Tack; Kurtis Trout; Val C Sheffield; Jim J-C Lin; Thomas L Casavant; Marcelo B Soares
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

10.  Comparative genomics of gene expression in the parasitic and free-living nematodes Strongyloides stercoralis and Caenorhabditis elegans.

Authors:  Makedonka Mitreva; James P McCarter; John Martin; Mike Dante; Todd Wylie; Brandi Chiapelli; Deana Pape; Sandra W Clifton; Thomas B Nutman; Robert H Waterston
Journal:  Genome Res       Date:  2004-02       Impact factor: 9.043

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