Literature DB >> 10572188

A multiple-capillary electrophoresis system for small-scale DNA sequencing and analysis.

J Zhang1, K O Voss, D F Shaw, K P Roos, D F Lewis, J Yan, R Jiang, H Ren, J Y Hou, Y Fang, X Puyang, H Ahmadzadeh, N J Dovichi.   

Abstract

A five-capillary system has been developed for DNA sequencing and analysis. The post-column fluorescence detector is based on a sheath-flow cuvette. The instrument provides uniform and continuous illumination of the samples. The cuvette virtually eliminates cross-talk in the fluorescence signal between capillaries. Discrete single-photon counting avalanche photodiodes provide high efficiency light detection. The instrument has detection limits (3sigma) of 130 +/- 30 fluorescein molecules injected onto each capillary. Over 650 bases of sequence at 98.8% accuracy were generated in 100 min at 50 degrees C from M13mp18. Separation and detection of short tandem repeats proved efficient and accurate with the use of internal standards for direct comparison of migration times between capillaries.

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Year:  1999        PMID: 10572188      PMCID: PMC148759          DOI: 10.1093/nar/27.24.e36

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  7 in total

1.  RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer.

Authors:  K Shibata; M Itoh; K Aizawa; S Nagaoka; N Sasaki; P Carninci; H Konno; J Akiyama; K Nishi; T Kitsunai; H Tashiro; M Itoh; N Sumi; Y Ishii; S Nakamura; M Hazama; T Nishine; A Harada; R Yamamoto; H Matsumoto; S Sakaguchi; T Ikegami; K Kashiwagi; S Fujiwake; K Inoue; Y Togawa
Journal:  Genome Res       Date:  2000-11       Impact factor: 9.043

Review 2.  The use of capillary electrophoresis for DNA polymorphism analysis.

Authors:  Keith R Mitchelson
Journal:  Mol Biotechnol       Date:  2003-05       Impact factor: 2.695

3.  Reproducible two-dimensional capillary electrophoresis analysis of Barrett's esophagus tissues.

Authors:  James R Kraly; Megan R Jones; David G Gomez; Jane A Dickerson; Melissa M Harwood; Michael Eggertson; Thomas G Paulson; Carissa A Sanchez; Robert Odze; Ziding Feng; Brian J Reid; Norman J Dovichi
Journal:  Anal Chem       Date:  2006-09-01       Impact factor: 6.986

4.  Color-blind fluorescence detection for four-color DNA sequencing.

Authors:  Ernest K Lewis; Wade C Haaland; Freddy Nguyen; Daniel A Heller; Matthew J Allen; Robert R MacGregor; C Scott Berger; Britain Willingham; Lori A Burns; Graham B I Scott; Carter Kittrell; Bruce R Johnson; Robert F Curl; Michael L Metzker
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-30       Impact factor: 11.205

5.  Third-generation electrokinetically pumped sheath-flow nanospray interface with improved stability and sensitivity for automated capillary zone electrophoresis-mass spectrometry analysis of complex proteome digests.

Authors:  Liangliang Sun; Guijie Zhu; Zhenbin Zhang; Si Mou; Norman J Dovichi
Journal:  J Proteome Res       Date:  2015-03-27       Impact factor: 4.466

6.  Capillary array isoelectric focusing with laser-induced fluorescence detection: milli-pH unit resolution and yoctomole mass detection limits in a 32-channel system.

Authors:  Oluwatosin O Dada; Lauren M Ramsay; Jane A Dickerson; Nathan Cermak; Rong Jiang; Cuiru Zhu; Norman J Dovichi
Journal:  Anal Bioanal Chem       Date:  2010-03-25       Impact factor: 4.142

7.  Interface of an array of five capillaries with an array of one-nanoliter wells for high-resolution electrophoretic analysis as an approach to high-throughput chemical cytometry.

Authors:  Anna K Boardman; Sarah C McQuaide; Cuiru Zhu; Colin D Whitmore; Mary E Lidstrom; Norman J Dovichi
Journal:  Anal Chem       Date:  2008-08-22       Impact factor: 6.986

  7 in total

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