Literature DB >> 10563015

The analysis of Circe, an LTR retrotransposon of Drosophila melanogaster, suggests that an insertion of non-LTR retrotransposons into LTR elements can create chimeric retroelements.

A Losada1, J P Abad, M Agudo, A Villasante.   

Abstract

Circe is a transposable element recently identified in Drosophila melanogaster which appears to be mostly associated with the constitutive heterochromatin. This element shows the structural features of a long terminal repeat (LTR)-containing retrotransposon: It is flanked by 240-bp-long terminal repeats, and its two open reading frames encode putative proteins resembling the gag and pol polyproteins of retroviruses. However, Circe displays striking similarities of both LOA and Ulysses, a non-LTR element and an LTR element, respectively. The result of its phylogenetic and structural analysis has allowed us to propose a new mechanism for non-LTR retrotransposon evolution.

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Year:  1999        PMID: 10563015     DOI: 10.1093/oxfordjournals.molbev.a026044

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  10 in total

1.  BAC clones generated from sheared DNA.

Authors:  Kazutoyo Osoegawa; Gery M Vessere; Chung Li Shu; Roger A Hoskins; José P Abad; Beatriz de Pablos; Alfredo Villasante; Pieter J de Jong
Journal:  Genomics       Date:  2006-11-13       Impact factor: 5.736

2.  High-resolution analysis of Drosophila heterochromatin organization using SuUR Su(var)3-9 double mutants.

Authors:  Eugenia N Andreyeva; Tatyana D Kolesnikova; Olga V Demakova; Maria Mendez-Lago; Galina V Pokholkova; Elena S Belyaeva; Fabrizio Rossi; Patrizio Dimitri; Alfredo Villasante; Igor F Zhimulev
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-18       Impact factor: 11.205

3.  Identification of transposable elements using multiple alignments of related genomes.

Authors:  Anat Caspi; Lior Pachter
Journal:  Genome Res       Date:  2005-12-14       Impact factor: 9.043

4.  Reconstructing the evolutionary history of gypsy retrotransposons in the Périgord black truffle (Tuber melanosporum Vittad.).

Authors:  Thibaut Payen; Claude Murat; Francis Martin
Journal:  Mycorrhiza       Date:  2016-03-30       Impact factor: 3.387

5.  Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome.

Authors:  Casey M Bergman; Hadi Quesneville; Dominique Anxolabéhère; Michael Ashburner
Journal:  Genome Biol       Date:  2006       Impact factor: 13.583

6.  The Release 6 reference sequence of the Drosophila melanogaster genome.

Authors:  Roger A Hoskins; Joseph W Carlson; Kenneth H Wan; Soo Park; Ivonne Mendez; Samuel E Galle; Benjamin W Booth; Barret D Pfeiffer; Reed A George; Robert Svirskas; Martin Krzywinski; Jacqueline Schein; Maria Carmela Accardo; Elisabetta Damia; Giovanni Messina; María Méndez-Lago; Beatriz de Pablos; Olga V Demakova; Evgeniya N Andreyeva; Lidiya V Boldyreva; Marco Marra; A Bernardo Carvalho; Patrizio Dimitri; Alfredo Villasante; Igor F Zhimulev; Gerald M Rubin; Gary H Karpen; Susan E Celniker
Journal:  Genome Res       Date:  2015-01-14       Impact factor: 9.043

7.  Double insertion of transposable elements provides a substrate for the evolution of satellite DNA.

Authors:  Michael P McGurk; Daniel A Barbash
Journal:  Genome Res       Date:  2018-03-27       Impact factor: 9.043

8.  The Diversity of Sequence and Chromosomal Distribution of New Transposable Element-Related Segments in the Rye Genome Revealed by FISH and Lineage Annotation.

Authors:  Yingxin Zhang; Chengming Fan; Shuangshuang Li; Yuhong Chen; Richard R-C Wang; Xiangqi Zhang; Fangpu Han; Zanmin Hu
Journal:  Front Plant Sci       Date:  2017-10-04       Impact factor: 5.753

9.  The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective.

Authors:  Joshua S Kaminker; Casey M Bergman; Brent Kronmiller; Joseph Carlson; Robert Svirskas; Sandeep Patel; Erwin Frise; David A Wheeler; Suzanna E Lewis; Gerald M Rubin; Michael Ashburner; Susan E Celniker
Journal:  Genome Biol       Date:  2002-12-23       Impact factor: 13.583

10.  The structure of an endogenous Drosophila centromere reveals the prevalence of tandemly repeated sequences able to form i-motifs.

Authors:  Miguel Garavís; María Méndez-Lago; Valérie Gabelica; Siobhan L Whitehead; Carlos González; Alfredo Villasante
Journal:  Sci Rep       Date:  2015-08-20       Impact factor: 4.379

  10 in total

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