Literature DB >> 1055403

Stochastics of cycle completions (fluxes) in biochemical kinetic diagrams.

T L Hill, Y D Chen.   

Abstract

Over a long time period, the rate constants for cycle completions (one-way fluxes) in steady-state biochemical diagrams can be expressed explicitly in terms of the elementary rate constants for transitions between states of the diagram. These cycle rate constants determine the mean one-way fluxes in the diagram and also fluctuations about the means. These properties are confirmed by Monte Carlo computer simulations on special cases. Two other topics are considered briefly: the effect of the starting state or states on the numbers of cycle completions in computer simulation runs; and the more detailed stochastic approach required if individual cycle completions are to be followed (i.e., if the "long time" restriction is removed).

Mesh:

Year:  1975        PMID: 1055403      PMCID: PMC432518          DOI: 10.1073/pnas.72.4.1291

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  15 in total

1.  Free energy levels and entropy production associated with biochemical kinetic diagrams.

Authors:  T L Hill; R M Simmons
Journal:  Proc Natl Acad Sci U S A       Date:  1976-01       Impact factor: 11.205

2.  Steady-state kinetic formalism applied to multienzyme complexes, oxidative phosphorylation, and interacting enzymes.

Authors:  T L Hill
Journal:  Proc Natl Acad Sci U S A       Date:  1976-12       Impact factor: 11.205

3.  The turning wheel: a study in steady states.

Authors:  J Wyman
Journal:  Proc Natl Acad Sci U S A       Date:  1975-10       Impact factor: 11.205

4.  Mechanism and kinetics of a sodium-driven bacterial flagellar motor.

Authors:  Chien-Jung Lo; Yoshiyuki Sowa; Teuta Pilizota; Richard M Berry
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-20       Impact factor: 11.205

5.  Further properties of random walks on diagrams (graphs) with and without cycles.

Authors:  T L Hill
Journal:  Proc Natl Acad Sci U S A       Date:  1988-05       Impact factor: 11.205

6.  Interrelations between random walks on diagrams (graphs) with and without cycles.

Authors:  T L Hill
Journal:  Proc Natl Acad Sci U S A       Date:  1988-05       Impact factor: 11.205

7.  Theoretical study of the effect of enzyme-enzyme interactions on steady-state enzyme kinetics.

Authors:  T L Hill
Journal:  Proc Natl Acad Sci U S A       Date:  1977-09       Impact factor: 11.205

8.  Interacting enzyme systems at steady state: location of the phase transition in approximations of the mean field type.

Authors:  T L Hill; Y D Chen
Journal:  Proc Natl Acad Sci U S A       Date:  1978-07       Impact factor: 11.205

9.  Intrinsic and Extrinsic Thermodynamics for Stochastic Population Processes with Multi-Level Large-Deviation Structure.

Authors:  Eric Smith
Journal:  Entropy (Basel)       Date:  2020-10-07       Impact factor: 2.524

10.  The frequency of cyclic processes in biological multistate systems.

Authors:  H H Kohler; E Vollmerhaus
Journal:  J Math Biol       Date:  1980-05       Impact factor: 2.259

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