Literature DB >> 10548734

Isolation and mapping of a human lung-specific gene, TSA1902, encoding a novel chitinase family member.

A Saito1, K Ozaki, T Fujiwara, Y Nakamura, A Tanigami.   

Abstract

Using differential display technique, we have isolated a novel human gene expressed specifically in the lung. Two forms of the gene, designated TSA1902, were transcribed by alternate mRNA splicing. The transcribed mRNAs, termed TSA1902-L and TSA1902-S, putatively encode proteins of 368 and 315 amino acids, respectively, which show high similarity to human chitotriosidase protein. The N-terminal region of TSA1902-L protein contains the conserved active site residues (DXXDXDXE) of the catalytic center of various chitinases which are essential for chitinase activity. The deduced protein sequence of TSA1902-S, however, does not possess this active site, with the N-terminal 54 amino acids present in TSA1902-L protein having been deleted. Both proteins lacked the secretory sequence of N-termini and, judging from the hydropathy profile, may be soluble proteins in the cytoplasm. Chromosomal mapping by radiation hybrid analysis localized this gene to the chromosome 1p13.1-p21.3.

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Year:  1999        PMID: 10548734     DOI: 10.1016/s0378-1119(99)00394-7

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  8 in total

1.  Polymorphisms and haplotypes of acid mammalian chitinase are associated with bronchial asthma.

Authors:  Sibylle Bierbaum; Renate Nickel; Anja Koch; Susanne Lau; Klaus A Deichmann; Ulrich Wahn; Andrea Superti-Furga; Andrea Heinzmann
Journal:  Am J Respir Crit Care Med       Date:  2005-09-22       Impact factor: 21.405

Review 2.  Is the sugar always sweet in intestinal inflammation?

Authors:  Emiko Mizoguchi; Atsushi Mizoguchi
Journal:  Immunol Res       Date:  2007       Impact factor: 2.829

3.  Chitotriosidase is the primary active chitinase in the human lung and is modulated by genotype and smoking habit.

Authors:  Max A Seibold; Samantha Donnelly; Margaret Solon; Anh Innes; Prescott G Woodruff; Rolf G Boot; Esteban González Burchard; John V Fahy
Journal:  J Allergy Clin Immunol       Date:  2008-10-09       Impact factor: 10.793

4.  Quantification of Chitinase mRNA Levels in Human and Mouse Tissues by Real-Time PCR: Species-Specific Expression of Acidic Mammalian Chitinase in Stomach Tissues.

Authors:  Misa Ohno; Yuto Togashi; Kyoko Tsuda; Kazuaki Okawa; Minori Kamaya; Masayoshi Sakaguchi; Yasusato Sugahara; Fumitaka Oyama
Journal:  PLoS One       Date:  2013-06-27       Impact factor: 3.240

5.  Alternative splice variants in TIM barrel proteins from human genome correlate with the structural and evolutionary modularity of this versatile protein fold.

Authors:  Adrián Ochoa-Leyva; Gabriela Montero-Morán; Gloria Saab-Rincón; Luis G Brieba; Xavier Soberón
Journal:  PLoS One       Date:  2013-08-12       Impact factor: 3.240

6.  Chitinase mRNA levels by quantitative PCR using the single standard DNA: acidic mammalian chitinase is a major transcript in the mouse stomach.

Authors:  Misa Ohno; Kyoko Tsuda; Masayoshi Sakaguchi; Yasusato Sugahara; Fumitaka Oyama
Journal:  PLoS One       Date:  2012-11-21       Impact factor: 3.240

7.  Alternative splicing and protein structure evolution.

Authors:  Fabian Birzele; Gergely Csaba; Ralf Zimmer
Journal:  Nucleic Acids Res       Date:  2007-11-30       Impact factor: 16.971

8.  Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.

Authors:  Phuwanat Sakornsakolpat; Dmitry Prokopenko; Brian D Hobbs; Michael H Cho; Maxime Lamontagne; Nicola F Reeve; Anna L Guyatt; Victoria E Jackson; Nick Shrine; Dandi Qiao; Traci M Bartz; Deog Kyeom Kim; Mi Kyeong Lee; Jeanne C Latourelle; Xingnan Li; Jarrett D Morrow; Ma'en Obeidat; Annah B Wyss; Per Bakke; R Graham Barr; Terri H Beaty; Steven A Belinsky; Guy G Brusselle; James D Crapo; Kim de Jong; Dawn L DeMeo; Tasha E Fingerlin; Sina A Gharib; Amund Gulsvik; Ian P Hall; John E Hokanson; Woo Jin Kim; David A Lomas; Stephanie J London; Deborah A Meyers; George T O'Connor; Stephen I Rennard; David A Schwartz; Pawel Sliwinski; David Sparrow; David P Strachan; Ruth Tal-Singer; Yohannes Tesfaigzi; Jørgen Vestbo; Judith M Vonk; Jae-Joon Yim; Xiaobo Zhou; Yohan Bossé; Ani Manichaikul; Lies Lahousse; Edwin K Silverman; H Marike Boezen; Louise V Wain; Martin D Tobin
Journal:  Nat Genet       Date:  2019-02-25       Impact factor: 38.330

  8 in total

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