Literature DB >> 10545058

Detection of the factor V Leiden mutation by direct allele-specific hybridization of PCR amplicons to photoimmobilized locked nucleic acids.

H Orum1, M H Jakobsen, T Koch, J Vuust, M B Borre.   

Abstract

BACKGROUND: Individuals carrying the factor V Leiden mutation have been shown to have an increased risk of developing venous thromboembolism. Our aim was to develop an ELISA-like assay to detect the mutation in PCR-amplified genomic DNA using novel, high-affinity DNA analogs, termed locked nucleic acids (LNAs).
METHODS: LNA octamer probes complementary to the factor V wild-type or mutated sequence were covalently attached to individual wells of a microtiter plate. Biotinylated factor V amplicons were added, and hybridization to the immobilized LNA probes was scored colorimetrically using a horseradish peroxidase-anti-biotin Fab conjugate and tetramethylbenzidine substrate.
RESULTS: In a prospective study of 53 patients, the assay reproducibly scored both factor V homozygotes and heterozygotes with excellent sensitivity and specificity. All results were in complete agreement with the results obtained with the conventional PCR-restriction fragment length polymorphism technique.
CONCLUSIONS: The simplicity of the assay and its procedural relatedness to the widely used ELISA format should make it useful for routine factor V testing in the clinical laboratory.

Entities:  

Mesh:

Substances:

Year:  1999        PMID: 10545058

Source DB:  PubMed          Journal:  Clin Chem        ISSN: 0009-9147            Impact factor:   8.327


  17 in total

1.  Antisense inhibition of gene expression in cells by oligonucleotides incorporating locked nucleic acids: effect of mRNA target sequence and chimera design.

Authors:  Dwaine A Braasch; Yinghui Liu; David R Corey
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

2.  Locked nucleic acid (LNA) single nucleotide polymorphism (SNP) genotype analysis and validation using real-time PCR.

Authors:  Matthew P Johnson; Larisa M Haupt; Lyn R Griffiths
Journal:  Nucleic Acids Res       Date:  2004-03-26       Impact factor: 16.971

3.  Strong positional preference in the interaction of LNA oligonucleotides with DNA polymerase and proofreading exonuclease activities: implications for genotyping assays.

Authors:  Daniel A Di Giusto; Garry C King
Journal:  Nucleic Acids Res       Date:  2004-02-18       Impact factor: 16.971

4.  Single-nucleotide-polymorphism-specific PCR for quantification and discrimination of Chlamydia pneumoniae genotypes by use of a "locked" nucleic acid.

Authors:  Jan Rupp; Werner Solbach; Jens Gieffers
Journal:  Appl Environ Microbiol       Date:  2006-05       Impact factor: 4.792

5.  Stopped-flow kinetics of locked nucleic acid (LNA)-oligonucleotide duplex formation: studies of LNA-DNA and DNA-DNA interactions.

Authors:  U Christensen; N Jacobsen; V K Rajwanshi; J Wengel; T Koch
Journal:  Biochem J       Date:  2001-03-15       Impact factor: 3.857

6.  Amplification-free in situ KRAS point mutation detection at 60 copies per mL in urine in a background of 1000-fold wild type.

Authors:  Ceyhun E Kirimli; Wei-Heng Shih; Wan Y Shih
Journal:  Analyst       Date:  2016-02-21       Impact factor: 4.616

7.  Single nucleotide polymorphism genotyping using short, fluorescently labeled locked nucleic acid (LNA) probes and fluorescence polarization detection.

Authors:  Anton Simeonov; Theo T Nikiforov
Journal:  Nucleic Acids Res       Date:  2002-09-01       Impact factor: 16.971

8.  LNA-enhanced detection of single nucleotide polymorphisms in the apolipoprotein E.

Authors:  Nana Jacobsen; Joan Bentzen; Michael Meldgaard; Mogens Havsteen Jakobsen; Mogens Fenger; Sakari Kauppinen; Jan Skouv
Journal:  Nucleic Acids Res       Date:  2002-10-01       Impact factor: 16.971

9.  Molecularly resolved label-free sensing of single nucleobase mismatches by interfacial LNA probes.

Authors:  Sourav Mishra; Hiya Lahiri; Siddhartha Banerjee; Rupa Mukhopadhyay
Journal:  Nucleic Acids Res       Date:  2016-03-28       Impact factor: 16.971

Review 10.  Molecular beacons of xeno-nucleic acid for detecting nucleic acid.

Authors:  Qi Wang; Lei Chen; Yitao Long; He Tian; Junchen Wu
Journal:  Theranostics       Date:  2013-05-05       Impact factor: 11.556

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.