Literature DB >> 10542205

1H NMR investigation of the distal hydrogen bonding network and ligand tilt in the cyanomet complex of oxygen-avid Ascaris suum hemoglobin.

Z Xia1, W Zhang, B D Nguyen, G N Mar, A P Kloek, D E Goldberg.   

Abstract

The O(2)-avid hemoglobin from the parasitic nematode Ascaris suum exhibits one of the slowest known O(2) off rates. Solution (1)H NMR has been used to investigate the electronic and molecular structural properties of the active site for the cyano-met derivative of the recombinant first domain of this protein. Assignment of the heme, axial His, and majority of the residues in contact with the heme reveals a molecular structure that is the same as reported in the A. suum HbO(2) crystal structure (Yang, J., Kloek, A., Goldberg, D. E., and Mathews, F. S. (1995) Proc. Natl. Acad. Sci. U. S. A. 92, 4224-4228) with the exception that the heme in solution is rotated by 180 degrees about the alpha,gamma-meso axis relative to that in the crystal. The observed dipolar shifts, together with the crystal coordinates of HbO(2), provide the orientation of the magnetic axes in the molecular framework. The major magnetic axis, which correlates with the Fe-CN vector, is found oriented approximately 30 degrees away from the heme normal and indicates significant steric tilt because of interaction with Tyr(30)(B10). The three side chain labile protons for the distal residues Tyr(30)(B10) and Gln(64)(E7) were identified, and their relaxation, dipolar shifts, and nuclear Overhauser effects to adjacent residues used to place them in the distal pocket. It is shown that these two distal residues exhibit the same orientations ideal for H bonding to the ligand and to each other, as found in the A. suum HbO(2) crystal. It is concluded that the ligated cyanide participates in the same distal H bonding network as ligated O(2). The combination of the strong steric tilt of the bound cyanide and slow ring reorientation of the Tyr(30)(B10) side chain supports a crowded and constrained distal pocket.

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Year:  1999        PMID: 10542205     DOI: 10.1074/jbc.274.45.31819

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  3 in total

1.  1H-NMR study of the effect of temperature through reversible unfolding on the heme pocket molecular structure and magnetic properties of aplysia limacina cyano-metmyoglobin.

Authors:  Zhicheng Xia; Bao D Nguyen; Maurizio Brunori; Francesca Cutruzzolà; Gerd N La Mar
Journal:  Biophys J       Date:  2005-09-08       Impact factor: 4.033

2.  Solution 1H NMR characterization of the axial bonding of the two His in oxidized human cytoglobin.

Authors:  Vasyl Bondarenko; Sylvia Dewilde; Luc Moens; Gerd N La Mar
Journal:  J Am Chem Soc       Date:  2006-10-04       Impact factor: 15.419

3.  Globin-like proteins in Caenorhabditis elegans: in vivo localization, ligand binding and structural properties.

Authors:  Eva Geuens; David Hoogewijs; Marco Nardini; Evi Vinck; Alessandra Pesce; Laurent Kiger; Angela Fago; Lesley Tilleman; Sasha De Henau; Michael C Marden; Roy E Weber; Sabine Van Doorslaer; Jacques Vanfleteren; Luc Moens; Martino Bolognesi; Sylvia Dewilde
Journal:  BMC Biochem       Date:  2010-04-02       Impact factor: 4.059

  3 in total

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