Literature DB >> 10542081

Finding the right fold.

D P Goldenberg1.   

Abstract

Using mutational analysis, three groups have compared the transition states for the folding of two pairs of homologous proteins. The results of these studies suggest that protein folding mechanisms are conserved and are defined primarily by the overall topology of the native structures, as opposed to specific details of the interactions stabilizing these structures.

Mesh：

Substances：

Year:  1999        PMID： 10542081     DOI： 10.1038/14866

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN： 1072-8368


  17 in total

1.  An amino acid code for protein folding.

Authors:  J Rumbley; L Hoang; L Mayne; S W Englander
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-02       Impact factor: 11.205

2.  Transition-state structure as a unifying basis in protein-folding mechanisms: contact order, chain topology, stability, and the extended nucleus mechanism.

Authors:  A R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-15       Impact factor: 11.205

3.  Unspecific hydrophobic stabilization of folding transition states.

Authors:  Ana Rosa Viguera; Cristina Vega; Luis Serrano
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

4.  Insights into nucleic acid conformational dynamics from massively parallel stochastic simulations.

Authors:  Eric J Sorin; Young Min Rhee; Bradley J Nakatani; Vijay S Pande
Journal:  Biophys J       Date:  2003-08       Impact factor: 4.033

5.  Direct molecular dynamics observation of protein folding transition state ensemble.

Authors:  Feng Ding; Nikolay V Dokholyan; Sergey V Buldyrev; H Eugene Stanley; Eugene I Shakhnovich
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

6.  Critical nucleation size in the folding of small apparently two-state proteins.

Authors:  Yawen Bai; Hongyi Zhou; Yaoqi Zhou
Journal:  Protein Sci       Date:  2004-04-09       Impact factor: 6.725

7.  Funnel-like organization in sequence space determines the distributions of protein stability and folding rate preferred by evolution.

Authors:  Yu Xia; Michael Levitt
Journal:  Proteins       Date:  2004-04-01

8.  Characterization of the folding landscape of monomeric lactose repressor: quantitative comparison of theory and experiment.

Authors:  Payel Das; Corey J Wilson; Giovanni Fossati; Pernilla Wittung-Stafshede; Kathleen S Matthews; Cecilia Clementi
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-03       Impact factor: 11.205

9.  Phi values in protein-folding kinetics have energetic and structural components.

Authors:  Claudia Merlo; Ken A Dill; Thomas R Weikl
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-11       Impact factor: 11.205

10.  Minimizing frustration by folding in an aqueous environment.

Authors:  Carla Mattos; A Clay Clark
Journal:  Arch Biochem Biophys       Date:  2007-07-14       Impact factor: 4.013
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