Literature DB >> 10527741

MUSIC in triple-resonance experiments: amino acid type-selective (1)H-(15)N correlations

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Abstract

Amino acid type-selective triple-resonance experiments can be of great help for the assignment of protein spectra, since they help to remove ambiguities in either manual or automated assignment procedures. Here, modified triple-resonance experiments that yield amino acid type-selective (1)H-(15)N correlations are presented. They are based on novel coherence transfer schemes, the MUSIC pulse sequence elements, that replace the initial INEPT transfer and are selective for XH(2) or XH(3) (X can be (15)N or (13)C). The desired amino acid type is thereby selected based on the topology of the side chain. Experiments for Gly (G-HSQC); Ala (A-HSQC); Thr, Val, Ile, and Ala (TAVI-HSQC); Thr and Ala (TA-HSQC), as well as Asn and Gln (N-HSQC and QN-HSQC), are described. The new experiments are recorded as two-dimensional experiments and therefore need only small amounts of spectrometer time. The performance of the experiments is demonstrated with the application to two protein domains. Copyright 1999 Academic Press.

Entities:  

Year:  1999        PMID: 10527741     DOI: 10.1006/jmre.1999.1881

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  37 in total

1.  Sequence-specific NMR assignment of proteins by global fragment mapping with the program MAPPER.

Authors:  P Güntert; M Salzmann; D Braun; K Wüthrich
Journal:  J Biomol NMR       Date:  2000-10       Impact factor: 2.835

2.  Efficient identification of amino acid types for fast protein backbone assignments.

Authors:  H D Ou; H C Lai; Z Serber; V Dötsch
Journal:  J Biomol NMR       Date:  2001-11       Impact factor: 2.835

3.  Automated protein fold determination using a minimal NMR constraint strategy.

Authors:  Deyou Zheng; Yuanpeng J Huang; Hunter N B Moseley; Rong Xiao; James Aramini; G V T Swapna; Gaetano T Montelione
Journal:  Protein Sci       Date:  2003-06       Impact factor: 6.725

4.  Data requirements for reliable chemical shift assignments in deuterated proteins.

Authors:  T Kevin Hitchens; Scott A McCallum; Gordon S Rule
Journal:  J Biomol NMR       Date:  2003-01       Impact factor: 2.835

5.  Mars -- robust automatic backbone assignment of proteins.

Authors:  Young-Sang Jung; Markus Zweckstetter
Journal:  J Biomol NMR       Date:  2004-09       Impact factor: 2.835

6.  A modified strategy for sequence specific assignment of protein NMR spectra based on amino acid type selective experiments.

Authors:  Mario Schubert; Dirk Labudde; Dietmar Leitner; Hartmut Oschkinat; Peter Schmieder
Journal:  J Biomol NMR       Date:  2005-02       Impact factor: 2.835

7.  CASA: an efficient automated assignment of protein mainchain NMR data using an ordered tree search algorithm.

Authors:  Jianyong Wang; Tianzhi Wang; Erik R P Zuiderweg; Gordon M Crippen
Journal:  J Biomol NMR       Date:  2005-12       Impact factor: 2.835

8.  PASA--a program for automated protein NMR backbone signal assignment by pattern-filtering approach.

Authors:  Yizhuang Xu; Xiaoxia Wang; Jun Yang; Julia Vaynberg; Jun Qin
Journal:  J Biomol NMR       Date:  2006-01       Impact factor: 2.835

9.  Amino-acid type identification in 15N-HSQC spectra by combinatorial selective 15N-labelling.

Authors:  Peter S C Wu; Kiyoshi Ozawa; Slobodan Jergic; Xun-Cheng Su; Nicholas E Dixon; Gottfried Otting
Journal:  J Biomol NMR       Date:  2006-01       Impact factor: 2.835

10.  Use of biosynthetic fractional 13C-labeling for backbone NMR assignment of proteins.

Authors:  Hideo Iwai; Jocelyne Fiaux
Journal:  J Biomol NMR       Date:  2007-01-13       Impact factor: 2.835

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