Literature DB >> 10525681

Tissue-Specific Expressed Sequence Tags from the Black Tiger Shrimp Penaeus monodon.

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Abstract

: Expressed sequence tag data were generated from complementary DNA libraries created from cephalothorax, eyestalk, and pleopod tissue of the black tiger shrimp (Penaeus monodon). Significant database matches were found for 48 of 83 nuclear genes sequenced from the cephalothorax library, 22 of 55 nuclear genes from the eyestalk library, and 6 of 13 nuclear genes from the pleopod library. The putative identities of these genes reflected the expected tissue specificity. For example, genes for digestive enzymes were identified from the cephalothorax library and genes involved in the visual and neuroendocrine system from the eyestalk library. A few sequences matched anonymous EST or genomic sequences, and others contained mini-satellite or microsatellite repeat sequences. The remainder, 31 from the cephalothorax library, 25 from the eyestalk library, and 5 from the pleopod library, were sequences of high nucleotide complexity with no matches in any database searched and thus may represent novel genes.

Entities:  

Year:  1999        PMID: 10525681     DOI: 10.1007/pl00011803

Source DB:  PubMed          Journal:  Mar Biotechnol (NY)        ISSN: 1436-2228            Impact factor:   3.619


  6 in total

Review 1.  A review of the major penaeid shrimp EST studies and the construction of a shrimp transcriptome database based on the ESTs from four penaeid shrimp.

Authors:  Jiann-Horng Leu; Shu-Hwa Chen; Yu-Bin Wang; Yen-Chen Chen; Sheng-Yao Su; Chung-Yen Lin; Jan-Ming Ho; Chu-Fang Lo
Journal:  Mar Biotechnol (NY)       Date:  2010-04-17       Impact factor: 3.619

2.  Cloning and molecular characterization of heat shock cognate 70 from tiger shrimp (Penaeus monodon).

Authors:  Wan-Yu Lo; Kuan-Fu Liu; I-Chiu Liao; Yen-Ling Song
Journal:  Cell Stress Chaperones       Date:  2004       Impact factor: 3.667

3.  Identification of immune-related genes in hemocytes of black tiger shrimp (Penaeus monodon).

Authors:  Premruethai Supungul; Sirawut Klinbunga; Rath Pichyangkura; Sarawut Jitrapakdee; Ikuo Hirono; Takashi Aoki; Anchalee Tassanakajon
Journal:  Mar Biotechnol (NY)       Date:  2002-10       Impact factor: 3.619

4.  ShrimpGPAT: a gene and protein annotation tool for knowledge sharing and gene discovery in shrimp.

Authors:  Parpakron Korshkari; Sirintra Vaiwsri; Timothy W Flegel; Sudsanguan Ngamsuriyaroj; Burachai Sonthayanon; Anuphap Prachumwat
Journal:  BMC Genomics       Date:  2014-06-21       Impact factor: 3.969

5.  Comparative analysis of differentially expressed genes in normal and white spot syndrome virus infected Penaeus monodon.

Authors:  Jiann-Horng Leu; Chih-Chin Chang; Jin-Lu Wu; Chun-Wei Hsu; Ikuo Hirono; Takashi Aoki; Hsueh-Fen Juan; Chu-Fang Lo; Guang-Hsiung Kou; Hsuan-Cheng Huang
Journal:  BMC Genomics       Date:  2007-05-16       Impact factor: 3.969

6.  The development of a high density linkage map for black tiger shrimp (Penaeus monodon) based on cSNPs.

Authors:  Matthew Baranski; Gopalapillay Gopikrishna; Nicholas A Robinson; Vinaya Kumar Katneni; Mudagandur S Shekhar; Jayakani Shanmugakarthik; Sarangapani Jothivel; Chavali Gopal; Pitchaiyappan Ravichandran; Matthew Kent; Mariann Arnyasi; Alphis G Ponniah
Journal:  PLoS One       Date:  2014-01-17       Impact factor: 3.240

  6 in total

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