Literature DB >> 10525163

Centric diatom morphogenesis: a model based on a DLA algorithm investigating the potential role of microtubules.

J Parkinson1, Y Brechet, R Gordon.   

Abstract

Diatoms are single-celled algae which possess characteristic rigid cell walls (frustules) composed of amorphous silica. Frustule formation occurs within a specialised organelle termed the silica deposition vesicle (SDV). During diatom morphogenesis, silica particles are transported to the SDV by silica transport vesicles. Once released within the SDV, the particles are then thought to diffuse until they encounter part of the growing aggregate upon which they adhere. The particles may then undergo a further period of surface relocalisation (sintering) which leads to a smoothing of the surface. A number of computer simulations based on a modified diffusion-limited aggregation (DLA) algorithm, have been undertaken to investigate the potential role of microtubules (which are known to be associated with the periphery of the SDV) in localising deposition of new siliceous material. Based on our findings, we present a new model of diatom morphogenesis which is able to account for many morphological features of diatoms including the influence of environmental effects such as changes in pH and salinity, and the formation of a regular branched pattern.

Entities:  

Mesh:

Year:  1999        PMID: 10525163     DOI: 10.1016/s0167-4889(99)00116-0

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  8 in total

1.  Frustule morphogenesis of raphid pennate diatom Encyonema ventricosum (Agardh) Grunow.

Authors:  Yekaterina D Bedoshvili; Ksenia V Gneusheva; Maria S Popova; Tatyana N Avezova; Kirill Yu Arsentyev; Yelena V Likhoshway
Journal:  Protoplasma       Date:  2017-12-21       Impact factor: 3.356

2.  Experimental and numerical characterization of floc morphology: role of changing hydraulic retention time under flocculation mechanisms.

Authors:  Jun Nan; Meng Yao; Ting Chen; Zhenbei Wang; Qinggui Li; Dan Zhan
Journal:  Environ Sci Pollut Res Int       Date:  2015-10-21       Impact factor: 4.223

3.  Putative silicon transport vesicles in the cytoplasm of the diatom Synedra acus during surge uptake of silicon.

Authors:  Vadim V Annenkov; Tatjana N Basharina; Elena N Danilovtseva; Mikhail A Grachev
Journal:  Protoplasma       Date:  2013-03-24       Impact factor: 3.356

4.  Cationic amino acids specific biomimetic silicification in ionic liquid: a quest to understand the formation of 3-D structures in diatoms.

Authors:  Rajesh Ramanathan; Jos L Campbell; Sarvesh K Soni; Suresh K Bhargava; Vipul Bansal
Journal:  PLoS One       Date:  2011-03-03       Impact factor: 3.240

5.  Modelling the self-assembly of elastomeric proteins provides insights into the evolution of their domain architectures.

Authors:  Hongyan Song; John Parkinson
Journal:  PLoS Comput Biol       Date:  2012-03-01       Impact factor: 4.475

6.  Temperature affects the silicate morphology in a diatom.

Authors:  N Javaheri; R Dries; A Burson; L J Stal; P M A Sloot; J A Kaandorp
Journal:  Sci Rep       Date:  2015-06-26       Impact factor: 4.379

7.  Anomalies in the valve morphogenesis of the centric diatom alga Aulacoseira islandica caused by microtubule inhibitors.

Authors:  Yekaterina Bedoshvili; Ksenia Gneusheva; Maria Popova; Alexey Morozov; Yelena Likhoshway
Journal:  Biol Open       Date:  2018-08-22       Impact factor: 2.422

8.  Molecular Evolution of Tubulins in Diatoms.

Authors:  Kirill V Khabudaev; Darya P Petrova; Yekaterina D Bedoshvili; Yelena V Likhoshway; Mikhail A Grachev
Journal:  Int J Mol Sci       Date:  2022-01-06       Impact factor: 5.923

  8 in total

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