Literature DB >> 10517156

De novo design: backbone conformational constraints in nucleating helices and beta-hairpins.

P Balaram1.   

Abstract

A modular approach to synthetic protein design is being developed using conformationally constrained amino acid as stereochemical directors of polypeptide chain folding. An overview of studies aimed at constructing peptide helices using alpha,alpha-dialkyated residues and beta-hairpins using D-Pro as a turn nucleator is presented. The construction of helix-helix motifs and three- and four-stranded structures has been achieved using non-protein amino acids to stabilize specific elements of secondary structures.

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Year:  1999        PMID: 10517156     DOI: 10.1034/j.1399-3011.1999.00119.x

Source DB:  PubMed          Journal:  J Pept Res        ISSN: 1397-002X


  5 in total

1.  De novo design and characterization of an apolar helical hairpin peptide at atomic resolution: Compaction mediated by weak interactions.

Authors:  U A Ramagopal; S Ramakumar; D Sahal; V S Chauhan
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

2.  Investigation of the structure-activity relationship in a series of new LVV- and VV-hemorphin-7 analogues designed as potential anticonvulsant agents.

Authors:  Petar Todorov; Stela Georgieva; Petia Peneva; Jana Tchekalarova
Journal:  Amino Acids       Date:  2022-01-03       Impact factor: 3.520

3.  Incorporation of second coordination sphere D-amino acids alters Cd(II) geometries in designed thiolate-rich proteins.

Authors:  Leela Ruckthong; Aniruddha Deb; Lars Hemmingsen; James E Penner-Hahn; Vincent L Pecoraro
Journal:  J Biol Inorg Chem       Date:  2017-12-07       Impact factor: 3.358

4.  De novo protein design: crystallographic characterization of a synthetic peptide containing independent helical and hairpin domains.

Authors:  I L Karle; C Das; P Balaram
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-28       Impact factor: 11.205

5.  Observation of glycine zipper and unanticipated occurrence of ambidextrous helices in the crystal structure of a chiral undecapeptide.

Authors:  Rudresh Acharya; Madhvi Gupta; Suryanarayanarao Ramakumar; Udupi A Ramagopal; Virander S Chauhan
Journal:  BMC Struct Biol       Date:  2007-08-01
  5 in total

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