Literature DB >> 10507011

Determining transition states from kinetic isotope effects.

P J Berti1.   

Abstract

BEBOVA-based TS determination has been very successful in elucidating enzyme mechanisms at a level of detail that would be otherwise inaccessible. The resulting TS structures have been used successfully as the basis for designing TS mimics as enzyme inhibitors with dissociation constants to 10(-11) M. The structure interpolation approach has systematized the process of finding a TS, increasing both the speed and the accuracy of TS determination. The combination of information from several TSs into a unified model increases the accuracy of the process significantly and results in an extremely sensitive probe of changes in TS with varying reaction conditions (i.e., enzymatic vs nonenzymatic reactions, different enzymes, or different nucleophiles). The TS determination process is summarized in Fig. 15.

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Year:  1999        PMID: 10507011     DOI: 10.1016/s0076-6879(99)08016-7

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  9 in total

Review 1.  Binding isotope effects: boon and bane.

Authors:  Vern L Schramm
Journal:  Curr Opin Chem Biol       Date:  2007-09-14       Impact factor: 8.822

2.  Transition state analogue discrimination by related purine nucleoside phosphorylases.

Authors:  Erika A Taylor Ringia; Peter C Tyler; Gary B Evans; Richard H Furneaux; Andrew S Murkin; Vern L Schramm
Journal:  J Am Chem Soc       Date:  2006-06-07       Impact factor: 15.419

3.  Despite slow catalysis and confused substrate specificity, all ribulose bisphosphate carboxylases may be nearly perfectly optimized.

Authors:  Guillaume G B Tcherkez; Graham D Farquhar; T John Andrews
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-26       Impact factor: 11.205

4.  A new scheme to calculate isotope effects.

Authors:  Katarzyna Swiderek; Agnieszka Dybala-Defratyka; Daniel R Rohr
Journal:  J Mol Model       Date:  2010-10-19       Impact factor: 1.810

5.  An oxocarbenium-ion intermediate of a ribozyme reaction indicated by kinetic isotope effects.

Authors:  Peter J Unrau; David P Bartel
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-10       Impact factor: 11.205

6.  Investigating the roles of putative active site residues in the oxalate decarboxylase from Bacillus subtilis.

Authors:  Drazenka Svedruzić; Yong Liu; Laurie A Reinhardt; Ewa Wroclawska; W Wallace Cleland; Nigel G J Richards
Journal:  Arch Biochem Biophys       Date:  2007-04-05       Impact factor: 4.013

Review 7.  Enzymatic Transition States and Drug Design.

Authors:  Vern L Schramm
Journal:  Chem Rev       Date:  2018-10-18       Impact factor: 60.622

8.  Temperature-Dependent Kinetic Isotope Effects in R67 Dihydrofolate Reductase from Path-Integral Simulations.

Authors:  Anil R Mhashal; Dan Thomas Major
Journal:  J Phys Chem B       Date:  2021-02-01       Impact factor: 2.991

9.  Transition-State Vibrational Analysis and Isotope Effects for COMT-Catalyzed Methyl Transfer.

Authors:  Maite Roca; Ian H Williams
Journal:  J Am Chem Soc       Date:  2020-08-27       Impact factor: 15.419

  9 in total

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