Literature DB >> 10493829

Genome duplications and other features in 12 Mb of DNA sequence from human chromosome 16p and 16q.

B J Loftus1, U J Kim, V P Sneddon, F Kalush, R Brandon, J Fuhrmann, T Mason, M L Crosby, M Barnstead, L Cronin, A Deslattes Mays, Y Cao, R X Xu, H L Kang, S Mitchell, E E Eichler, P C Harris, J C Venter, M D Adams.   

Abstract

Several publicly funded large-scale sequencing efforts have been initiated with the goal of completing the first reference human genome sequence by the year 2005. Here we present the results of analysis of 11.8 Mb of genomic sequence from chromosome 16. The apparent gene density varies throughout the region, but the number of genes predicted (84) suggests that this is a gene-poor region. This result may also suggest that the total number of human genes is likely to be at the lower end of published estimates. One of the most interesting aspects of this region of the genome is the presence of highly homologous, recently duplicated tracts of sequence distributed throughout the p-arm. Such duplications have implications for mapping and gene analysis as well as the predisposition to recurrent chromosomal structural rearrangements associated with genetic disease. Copyright 1999 Academic Press.

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Year:  1999        PMID: 10493829     DOI: 10.1006/geno.1999.5927

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  46 in total

1.  The mosaic structure of human pericentromeric DNA: a strategy for characterizing complex regions of the human genome.

Authors:  J E Horvath; S Schwartz; E E Eichler
Journal:  Genome Res       Date:  2000-06       Impact factor: 9.043

2.  Segmental duplications: organization and impact within the current human genome project assembly.

Authors:  J A Bailey; A M Yavor; H F Massa; B J Trask; E E Eichler
Journal:  Genome Res       Date:  2001-06       Impact factor: 9.043

3.  Complex genomic rearrangements lead to novel primate gene function.

Authors:  Francesca D Ciccarelli; Christian von Mering; Mikita Suyama; Eoghan D Harrington; Elisa Izaurralde; Peer Bork
Journal:  Genome Res       Date:  2005-02-14       Impact factor: 9.043

4.  Recurrent duplication-driven transposition of DNA during hominoid evolution.

Authors:  Matthew E Johnson; Ze Cheng; V Anne Morrison; Steven Scherer; Mario Ventura; Richard A Gibbs; Eric D Green; Evan E Eichler
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-13       Impact factor: 11.205

Review 5.  Molecular diagnostics for autosomal dominant polycystic kidney disease.

Authors:  Peter C Harris; Sandro Rossetti
Journal:  Nat Rev Nephrol       Date:  2010-02-23       Impact factor: 28.314

6.  Identification of gene mutations in autosomal dominant polycystic kidney disease through targeted resequencing.

Authors:  Sandro Rossetti; Katharina Hopp; Robert A Sikkink; Jamie L Sundsbak; Yean Kit Lee; Vickie Kubly; Bruce W Eckloff; Christopher J Ward; Christopher G Winearls; Vicente E Torres; Peter C Harris
Journal:  J Am Soc Nephrol       Date:  2012-03-01       Impact factor: 10.121

7.  Characterization of large rearrangements in autosomal dominant polycystic kidney disease and the PKD1/TSC2 contiguous gene syndrome.

Authors:  Mark B Consugar; Wai C Wong; Patrick A Lundquist; Sandro Rossetti; Vickie J Kubly; Denise L Walker; Laureano J Rangel; Richard Aspinwall; W Patrick Niaudet; Seza Ozen; Albert David; Milen Velinov; Eric J Bergstralh; Kyongtae T Bae; Arlene B Chapman; Lisa M Guay-Woodford; Jared J Grantham; Vicente E Torres; Julian R Sampson; Brian D Dawson; Peter C Harris
Journal:  Kidney Int       Date:  2008-09-24       Impact factor: 10.612

8.  A recurrent 16p12.1 microdeletion supports a two-hit model for severe developmental delay.

Authors:  Santhosh Girirajan; Jill A Rosenfeld; Gregory M Cooper; Francesca Antonacci; Priscillia Siswara; Andy Itsara; Laura Vives; Tom Walsh; Shane E McCarthy; Carl Baker; Heather C Mefford; Jeffrey M Kidd; Sharon R Browning; Brian L Browning; Diane E Dickel; Deborah L Levy; Blake C Ballif; Kathryn Platky; Darren M Farber; Gordon C Gowans; Jessica J Wetherbee; Alexander Asamoah; David D Weaver; Paul R Mark; Jennifer Dickerson; Bhuwan P Garg; Sara A Ellingwood; Rosemarie Smith; Valerie C Banks; Wendy Smith; Marie T McDonald; Joe J Hoo; Beatrice N French; Cindy Hudson; John P Johnson; Jillian R Ozmore; John B Moeschler; Urvashi Surti; Luis F Escobar; Dima El-Khechen; Jerome L Gorski; Jennifer Kussmann; Bonnie Salbert; Yves Lacassie; Alisha Biser; Donna M McDonald-McGinn; Elaine H Zackai; Matthew A Deardorff; Tamim H Shaikh; Eric Haan; Kathryn L Friend; Marco Fichera; Corrado Romano; Jozef Gécz; Lynn E DeLisi; Jonathan Sebat; Mary-Claire King; Lisa G Shaffer; Evan E Eichler
Journal:  Nat Genet       Date:  2010-02-14       Impact factor: 38.330

9.  Infantile convulsions with paroxysmal dyskinesia (ICCA syndrome) and copy number variation at human chromosome 16p11.

Authors:  Patrice Roll; Damien Sanlaville; Jennifer Cillario; Audrey Labalme; Nadine Bruneau; Annick Massacrier; Marc Délepine; Philippe Dessen; Vladimir Lazar; Andrée Robaglia-Schlupp; Gaëtan Lesca; Elisabeth Jouve; Gabrielle Rudolf; Jacques Rochette; G Mark Lathrop; Pierre Szepetowski
Journal:  PLoS One       Date:  2010-10-29       Impact factor: 3.240

10.  Tandem repeats modify the structure of human genes hosted in segmental duplications.

Authors:  Anna De Grassi; Francesca D Ciccarelli
Journal:  Genome Biol       Date:  2009-12-02       Impact factor: 13.583

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