Literature DB >> 10473773

Compositional correlations in the chicken genome.

H Musto1, H Romero, A Zavala, G Bernardi.   

Abstract

This paper analyses the compositional correlations that hold in the chicken genome. Significant linear correlations were found among the regions studied-coding sequences (and their first, second, and third codon positions), flanking regions (5' and 3'), and introns-as is the case in the human genome. We found that these compositional correlations are not limited to global GC levels but even extend to individual bases. Furthermore, an analysis of 1037 coding sequences has confirmed a correlation among GC(3), GC(2), and GC(1). The implications of these results are discussed.

Entities:  

Mesh:

Substances:

Year:  1999        PMID: 10473773     DOI: 10.1007/pl00006555

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  8 in total

1.  Compositional gene landscapes in vertebrates.

Authors:  Stéphane Cruveiller; Kamel Jabbari; Oliver Clay; Giorgio Bernardi
Journal:  Genome Res       Date:  2004-05       Impact factor: 9.043

2.  Patterns of vertebrate isochore evolution revealed by comparison of expressed mammalian, avian, and crocodilian genes.

Authors:  Jena L Chojnowski; James Franklin; Yoshinao Katsu; Taisen Iguchi; Louis J Guillette; Rebecca T Kimball; Edward L Braun
Journal:  J Mol Evol       Date:  2007-08-03       Impact factor: 2.395

3.  What We Know and What We Should Know About Codon Usage.

Authors:  Héctor Musto
Journal:  J Mol Evol       Date:  2016-05-06       Impact factor: 2.395

4.  In Memoriam of Giorgio Bernardi and Noboru Sueoka: A Personal View.

Authors:  Héctor Musto
Journal:  J Mol Evol       Date:  2022-07-15       Impact factor: 3.973

5.  Strong heterogeneity in nucleotidic composition and codon bias in the pea aphid (Acyrthosiphon pisum) shown by EST-based coding genome reconstruction.

Authors:  Claude Rispe; Fabrice Legeai; Jean-Pierre Gauthier; Denis Tagu
Journal:  J Mol Evol       Date:  2007-10-10       Impact factor: 2.395

6.  cDNA-based gene mapping and GC3 profiling in the soft-shelled turtle suggest a chromosomal size-dependent GC bias shared by sauropsids.

Authors:  Shigehiro Kuraku; Junko Ishijima; Chizuko Nishida-Umehara; Kiyokazu Agata; Shigeru Kuratani; Yoichi Matsuda
Journal:  Chromosome Res       Date:  2006-03-17       Impact factor: 5.239

7.  Unresolved orthology and peculiar coding sequence properties of lamprey genes: the KCNA gene family as test case.

Authors:  Huan Qiu; Falk Hildebrand; Shigehiro Kuraku; Axel Meyer
Journal:  BMC Genomics       Date:  2011-06-23       Impact factor: 3.969

8.  An Isochore-Like Structure in the Genome of the Flatworm Schistosoma mansoni.

Authors:  Guillermo Lamolle; Anna V Protasio; Andrés Iriarte; Eugenio Jara; Diego Simón; Héctor Musto
Journal:  Genome Biol Evol       Date:  2016-08-16       Impact factor: 3.416

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.