Literature DB >> 10467097

A productive NADP+ binding mode of ferredoxin-NADP + reductase revealed by protein engineering and crystallographic studies.

Z Deng1, A Aliverti, G Zanetti, A K Arakaki, J Ottado, E G Orellano, N B Calcaterra, E A Ceccarelli, N Carrillo, P A Karplus.   

Abstract

The flavoenzyme ferredoxin-NADP+ reductase (FNR) catalyzes the production of NADPH during photosynthesis. Whereas the structures of FNRs from spinach leaf and a cyanobacterium as well as many of their homologs have been solved, none of these studies has yielded a productive geometry of the flavin-nicotinamide interaction. Here, we show that this failure occurs because nicotinamide binding to wild type FNR involves the energetically unfavorable displacement of the C-terminal Tyr side chain. We used mutants of this residue (Tyr 308) of pea FNR to obtain the structures of productive NADP+ and NADPH complexes. These structures reveal a unique NADP+ binding mode in which the nicotinamide ring is not parallel to the flavin isoalloxazine ring, but lies against it at an angle of approximately 30 degrees, with the C4 atom 3 A from the flavin N5 atom.

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Year:  1999        PMID: 10467097     DOI: 10.1038/12307

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  42 in total

1.  Ferredoxin:NADPH oxidoreductase is recruited to thylakoids by binding to a polyproline type II helix in a pH-dependent manner.

Authors:  Ferdinand Alte; Anna Stengel; J Philipp Benz; Eike Petersen; Jürgen Soll; Michael Groll; Bettina Bölter
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-25       Impact factor: 11.205

2.  Fd : FNR Electron Transfer Complexes: Evolutionary Refinement of Structural Interactions.

Authors:  Guy T Hanke; Genji Kurisu; Masami Kusunoki; Toshiharu Hase
Journal:  Photosynth Res       Date:  2004       Impact factor: 3.573

Review 3.  Photosynthesis research in Italy: a review.

Authors:  Giorgio Forti; Angela Agostiano; Roberto Barbato; Roberto Bassi; Enrico Brugnoli; Giovanni Finazzi; Flavio M Garlaschi; Robert C Jennings; Bruno Andrea Melandri; Massimo Trotta; Giovanni Venturoli; Giuliana Zanetti; Davide Zannoni; Giuseppe Zucchelli
Journal:  Photosynth Res       Date:  2006-06-06       Impact factor: 3.573

4.  A mobile tryptophan is the intrinsic charge transfer donor in a flavoenzyme essential for nikkomycin antibiotic biosynthesis.

Authors:  Robert C Bruckner; Gouhua Zhao; Patricia Ferreira; Marilyn Schuman Jorns
Journal:  Biochemistry       Date:  2007-01-23       Impact factor: 3.162

5.  Crystal structure analysis of Bacillus subtilis ferredoxin-NADP(+) oxidoreductase and the structural basis for its substrate selectivity.

Authors:  Hirofumi Komori; Daisuke Seo; Takeshi Sakurai; Yoshiki Higuchi
Journal:  Protein Sci       Date:  2010-11-03       Impact factor: 6.725

6.  Characterization of a pseudomonad 2-nitrobenzoate nitroreductase and its catabolic pathway-associated 2-hydroxylaminobenzoate mutase and a chemoreceptor involved in 2-nitrobenzoate chemotaxis.

Authors:  Hiroaki Iwaki; Takamichi Muraki; Shun Ishihara; Yoshie Hasegawa; Kathryn N Rankin; Traian Sulea; Jason Boyd; Peter C K Lau
Journal:  J Bacteriol       Date:  2007-02-02       Impact factor: 3.490

7.  Structure Guided Chemical Modifications of Propylthiouracil Reveal Novel Small Molecule Inhibitors of Cytochrome b5 Reductase 3 That Increase Nitric Oxide Bioavailability.

Authors:  Md Mizanur Rahaman; Fabio G Reinders; David Koes; Anh T Nguyen; Stephanie M Mutchler; Courtney Sparacino-Watkins; Roger A Alvarez; Megan P Miller; Dongmei Cheng; Bill B Chen; Edwin K Jackson; Carlos J Camacho; Adam C Straub
Journal:  J Biol Chem       Date:  2015-05-22       Impact factor: 5.157

8.  Probing the NADH- and Methyl Red-binding site of a FMN-dependent azoreductase (AzoA) from Enterococcus faecalis.

Authors:  Jinhui Feng; Ohgew Kweon; Haiyan Xu; Carl E Cerniglia; Huizhong Chen
Journal:  Arch Biochem Biophys       Date:  2012-02-24       Impact factor: 4.013

9.  High-resolution structure of the catalytic region of MICAL (molecule interacting with CasL), a multidomain flavoenzyme-signaling molecule.

Authors:  Christian Siebold; Nick Berrow; Thomas S Walter; Karl Harlos; Ray J Owens; David I Stuart; Jonathan R Terman; Alex L Kolodkin; R Jeroen Pasterkamp; E Yvonne Jones
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-07       Impact factor: 11.205

10.  High-resolution studies of hydride transfer in the ferredoxin:NADP+ reductase superfamily.

Authors:  Kelsey M Kean; Russell A Carpenter; Vittorio Pandini; Giuliana Zanetti; Andrea R Hall; Rick Faber; Alessandro Aliverti; P Andrew Karplus
Journal:  FEBS J       Date:  2017-08-29       Impact factor: 5.542

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