Literature DB >> 10461180

Kleisli: a new tool for data integration in biology.

S Y Chung1, L Wong.   

Abstract

One of the central problems in bioinformatics is data retrieval and integration. The existing biological databases are geographically distributed across the Internet, complex and heterogeneous in data types and data structures, and constantly changing. With the current rapid growth of biomedical data, the challenge is how large volumes of data retrieved from multiple databases can be transformed and integrated automatically and flexibly. This article describes a powerful new tool, the Kleisli system, for complex queries across multiple databases and data integration.

Mesh:

Year:  1999        PMID: 10461180     DOI: 10.1016/s0167-7799(99)01342-6

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  10 in total

1.  QIS: A framework for biomedical database federation.

Authors:  Luis Marenco; Tzuu-Yi Wang; Gordon Shepherd; Perry L Miller; Prakash Nadkarni
Journal:  J Am Med Inform Assoc       Date:  2004-08-06       Impact factor: 4.497

2.  BioMediator data integration: beyond genomics to neuroscience data.

Authors:  K Wang; P Tarczy-Hornoch; R Shaker; P Mork; J F Brinkley
Journal:  AMIA Annu Symp Proc       Date:  2005

3.  A biomedical open knowledge network harnesses the power of AI to understand deep human biology.

Authors:  Sergio E Baranzini; Katy Börner; John Morris; Charlotte A Nelson; Karthik Soman; Erica Schleimer; Michael Keiser; Mark Musen; Roger Pearce; Tahsin Reza; Brett Smith; Bruce W Herr; Boris Oskotsky; Angela Rizk-Jackson; Katherine P Rankin; Stephan J Sanders; Riley Bove; Peter W Rose; Sharat Israni; Sui Huang
Journal:  AI Mag       Date:  2022-03-31       Impact factor: 2.524

4.  BioWarehouse: a bioinformatics database warehouse toolkit.

Authors:  Thomas J Lee; Yannick Pouliot; Valerie Wagner; Priyanka Gupta; David W J Stringer-Calvert; Jessica D Tenenbaum; Peter D Karp
Journal:  BMC Bioinformatics       Date:  2006-03-23       Impact factor: 3.169

5.  SeqHound: biological sequence and structure database as a platform for bioinformatics research.

Authors:  Katerina Michalickova; Gary D Bader; Michel Dumontier; Hao Lieu; Doron Betel; Ruth Isserlin; Christopher W V Hogue
Journal:  BMC Bioinformatics       Date:  2002-10-25       Impact factor: 3.169

6.  Integrative Network Fusion: A Multi-Omics Approach in Molecular Profiling.

Authors:  Marco Chierici; Nicole Bussola; Alessia Marcolini; Margherita Francescatto; Alessandro Zandonà; Lucia Trastulla; Claudio Agostinelli; Giuseppe Jurman; Cesare Furlanello
Journal:  Front Oncol       Date:  2020-06-30       Impact factor: 6.244

7.  Correlation-based network analysis combined with machine learning techniques highlight the role of the GABA shunt in Brachypodium sylvaticum freezing tolerance.

Authors:  David Toubiana; Nir Sade; Lifeng Liu; Maria Del Mar Rubio Wilhelmi; Yariv Brotman; Urszula Luzarowska; John P Vogel; Eduardo Blumwald
Journal:  Sci Rep       Date:  2020-03-11       Impact factor: 4.379

8.  Brief overview of bioinformatics activities in Singapore.

Authors:  Frank Eisenhaber; Chee-Keong Kwoh; See-Kiong Ng; Wing-Kin Sung; Wing-King Sung; Limsoon Wong
Journal:  PLoS Comput Biol       Date:  2009-09-25       Impact factor: 4.475

9.  Teaching the fundamentals of biological data integration using classroom games.

Authors:  Maria Victoria Schneider; Rafael C Jimenez
Journal:  PLoS Comput Biol       Date:  2012-12-27       Impact factor: 4.475

Review 10.  Data integration in biological research: an overview.

Authors:  Vasileios Lapatas; Michalis Stefanidakis; Rafael C Jimenez; Allegra Via; Maria Victoria Schneider
Journal:  J Biol Res (Thessalon)       Date:  2015-09-02       Impact factor: 1.889

  10 in total

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