Literature DB >> 10458781

Tertiary Motifs in RNA Structure and Folding.

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Abstract

Specific tertiary structural motifs determine the complete architecture of RNA molecules (see picture for examples). Within the last few years a number of high-resolution crystal structures of complex RNAs have led to new insights into the mechanisms by which these complex folds are attained. In this review the structures of these tertiary motifs and how they influence the folding pathway of biological RNAs are discussed, as well as new developments in modeling RNA structure based upon these findings.

Year:  1999        PMID: 10458781     DOI: 10.1002/(sici)1521-3773(19990816)38:16<2326::aid-anie2326>3.0.co;2-3

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  145 in total

1.  HyPaLib: a database of RNAs and RNA structural elements defined by hybrid patterns.

Authors:  S Gräf; D Strothmann; S Kurtz; G Steger
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  TectoRNA: modular assembly units for the construction of RNA nano-objects.

Authors:  L Jaeger; E Westhof; N B Leontis
Journal:  Nucleic Acids Res       Date:  2001-01-15       Impact factor: 16.971

3.  NCIR: a database of non-canonical interactions in known RNA structures.

Authors:  Uma Nagaswamy; Maia Larios-Sanz; James Hury; Shakaala Collins; Zhengdong Zhang; Qin Zhao; George E Fox
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

4.  SCOR: a Structural Classification of RNA database.

Authors:  Peter S Klosterman; Makio Tamura; Stephen R Holbrook; Steven E Brenner
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

5.  Modelling ion binding to AA platform motifs in RNA: a continuum solvent study including conformational adaptation.

Authors:  C Burkhardt; M Zacharias
Journal:  Nucleic Acids Res       Date:  2001-10-01       Impact factor: 16.971

6.  Geometric nomenclature and classification of RNA base pairs.

Authors:  N B Leontis; E Westhof
Journal:  RNA       Date:  2001-04       Impact factor: 4.942

7.  Effects of magnesium ions on the stabilization of RNA oligomers of defined structures.

Authors:  Martin J Serra; John D Baird; Taraka Dale; Bridget L Fey; Kimberly Retatagos; Eric Westhof
Journal:  RNA       Date:  2002-03       Impact factor: 4.942

8.  De novo synthesis and development of an RNA enzyme.

Authors:  Yoshiya Ikawa; Kentaro Tsuda; Shigeyoshi Matsumura; Tan Inoue
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-13       Impact factor: 11.205

9.  Determination of thermodynamic parameters for HIV DIS type loop-loop kissing complexes.

Authors:  Albert Weixlbaumer; Andreas Werner; Christoph Flamm; Eric Westhof; Renée Schroeder
Journal:  Nucleic Acids Res       Date:  2004-09-30       Impact factor: 16.971

10.  Identifying kinetic barriers to mechanical unfolding of the T. thermophila ribozyme.

Authors:  Bibiana Onoa; Sophie Dumont; Jan Liphardt; Steven B Smith; Ignacio Tinoco; Carlos Bustamante
Journal:  Science       Date:  2003-03-21       Impact factor: 47.728

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