Literature DB >> 10448855

The complete nucleotide sequence of chromosome 3 of Plasmodium falciparum.

S Bowman1, D Lawson, D Basham, D Brown, T Chillingworth, C M Churcher, A Craig, R M Davies, K Devlin, T Feltwell, S Gentles, R Gwilliam, N Hamlin, D Harris, S Holroyd, T Hornsby, P Horrocks, K Jagels, B Jassal, S Kyes, J McLean, S Moule, K Mungall, L Murphy, K Oliver, M A Quail, M A Rajandream, S Rutter, J Skelton, R Squares, S Squares, J E Sulston, S Whitehead, J R Woodward, C Newbold, B G Barrell.   

Abstract

Analysis of Plasmodium falciparum chromosome 3, and comparison with chromosome 2, highlights novel features of chromosome organization and gene structure. The sub-telomeric regions of chromosome 3 show a conserved order of features, including repetitive DNA sequences, members of multigene families involved in pathogenesis and antigenic variation, a number of conserved pseudogenes, and several genes of unknown function. A putative centromere has been identified that has a core region of about 2 kilobases with an extremely high (adenine + thymidine) composition and arrays of tandem repeats. We have predicted 215 protein-coding genes and two transfer RNA genes in the 1,060,106-base-pair chromosome sequence. The predicted protein-coding genes can be divided into three main classes: 52.6% are not spliced, 45.1% have a large exon with short additional 5' or 3' exons, and 2.3% have a multiple exon structure more typical of higher eukaryotes.

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Year:  1999        PMID: 10448855     DOI: 10.1038/22964

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  73 in total

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Journal:  Nucleic Acids Res       Date:  2001-05-15       Impact factor: 16.971

5.  GeneFizz: A web tool to compare genetic (coding/non-coding) and physical (helix/coil) segmentations of DNA sequences. Gene discovery and evolutionary perspectives.

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Journal:  Nucleic Acids Res       Date:  2003-08-15       Impact factor: 16.971

Review 7.  Repetitive elements in genomes of parasitic protozoa.

Authors:  Bill Wickstead; Klaus Ersfeld; Keith Gull
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10.  High-throughput generation of P. falciparum functional molecules by recombinational cloning.

Authors:  João Carlos Aguiar; Joshua LaBaer; Peter L Blair; Victoria Y Shamailova; Malvika Koundinya; Joshua A Russell; Fengying Huang; Wenhong Mar; Robert M Anthony; Adam Witney; Sonia R Caruana; Leonardo Brizuela; John B Sacci; Stephen L Hoffman; Daniel J Carucci
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

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