Literature DB >> 10446260

Serial analysis of gene expression: rapid RT-PCR analysis of unknown SAGE tags.

A van den Berg1, J van der Leij, S Poppema.   

Abstract

In a pilot study on SAGE on Reed-Sternberg cells we have sequenced 1055 tags representing 701 genes. Screening of the GenBank database resulted in the identification of a corresponding gene or EST for 490 of them. For 211 of the tags no homology could be detected. A major problem of the serial analysis of gene expression (SAGE) approach is how to further analyse the unknown tags. We have developed an RT-PCR-based method, rapid analysis of unknown SAGE tags (RAST-PCR), to analyse the expression of the corresponding genes. This approach can be used as a screening method to investigate whether or not the gene is differentially expressed between several cell types of interest.

Mesh:

Year:  1999        PMID: 10446260      PMCID: PMC148578          DOI: 10.1093/nar/27.17.e17

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  12 in total

1.  Generation of longer cDNA fragments from serial analysis of gene expression tags for gene identification.

Authors:  J J Chen; J D Rowley; S M Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-04       Impact factor: 11.205

2.  The Arabidopsis root transcriptome by serial analysis of gene expression. Gene identification using the genome sequence.

Authors:  Cécile Fizames; Stéphane Muños; Céline Cazettes; Philippe Nacry; Jossia Boucherez; Frédéric Gaymard; David Piquemal; Valérie Delorme; Thérèse Commes; Patrick Doumas; Richard Cooke; Jacques Marti; Hervé Sentenac; Alain Gojon
Journal:  Plant Physiol       Date:  2004-01       Impact factor: 8.340

3.  Increasing the efficiency of SAGE adaptor ligation by directed ligation chemistry.

Authors:  Austin P So; Robin F B Turner; Charles A Haynes
Journal:  Nucleic Acids Res       Date:  2004-07-06       Impact factor: 16.971

Review 4.  Global analysis of gene expression in mammalian kidney.

Authors:  Olga Soutourina; Lydie Cheval; Alain Doucet
Journal:  Pflugers Arch       Date:  2004-12-21       Impact factor: 3.657

5.  SuperSAGE combined with PCR walking allows global gene expression profiling of banana (Musa acuminata), a non-model organism.

Authors:  Bert Coemans; Hideo Matsumura; Ryohei Terauchi; Serge Remy; Rony Swennen; László Sági
Journal:  Theor Appl Genet       Date:  2005-10-11       Impact factor: 5.699

Review 6.  Comprehensive gene expression analysis by transcript profiling.

Authors:  Jonathan Donson; Yiwen Fang; Gregg Espiritu-Santo; Weimei Xing; Andres Salazar; Susie Miyamoto; Veronica Armendarez; Wayne Volkmuth
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

7.  Comparison of the expression profiles of promastigotes and axenic amastigotes in Leishmania donovani using serial analysis of gene expression.

Authors:  Qiaoli Li; Yangxing Zhao; Bing Ni; Chenjiang Yao; Ying Zhou; Wangjie Xu; Zhaoxia Wang; Zhongdong Qiao
Journal:  Parasitol Res       Date:  2008-06-22       Impact factor: 2.289

8.  Gene expression analysis of plant host-pathogen interactions by SuperSAGE.

Authors:  Hideo Matsumura; Stefanie Reich; Akiko Ito; Hiromasa Saitoh; Sophien Kamoun; Peter Winter; Gunter Kahl; Monika Reuter; Detlev H Kruger; Ryohei Terauchi
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-15       Impact factor: 11.205

9.  β-catenin/Tcf-signaling appears to establish the murine ovarian surface epithelium (OSE) and remains active in selected postnatal OSE cells.

Authors:  Macalister Usongo; Riaz Farookhi
Journal:  BMC Dev Biol       Date:  2012-06-08       Impact factor: 1.978

10.  Global transcriptional profiling of the toxic dinoflagellate Alexandrium fundyense using Massively Parallel Signature Sequencing.

Authors:  Deana L Erdner; Donald M Anderson
Journal:  BMC Genomics       Date:  2006-04-25       Impact factor: 3.969

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